More than 300 homologs were found in PanDaTox collection
for query gene BBta_0534 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0534  methyl-accepting chemotaxis protein (MCP)  100 
 
 
733 aa  1466    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.627871  normal 
 
 
-
 
NC_009485  BBta_0533  methyl-accepting chemotaxis protein (MCP)  46.05 
 
 
712 aa  475  1e-132  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.566253  normal  0.595703 
 
 
-
 
NC_009485  BBta_0541  methyl-accepting chemotaxis protein (MCP)  67.91 
 
 
687 aa  433  1e-120  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.493714  normal 
 
 
-
 
NC_009485  BBta_2961  hypothetical protein  46.95 
 
 
561 aa  275  2.0000000000000002e-72  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.638324 
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  42.78 
 
 
675 aa  248  4e-64  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_011004  Rpal_5119  methyl-accepting chemotaxis sensory transducer  41.42 
 
 
563 aa  245  3e-63  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  41.49 
 
 
572 aa  239  2e-61  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_011004  Rpal_1830  methyl-accepting chemotaxis sensory transducer  40.59 
 
 
563 aa  238  2e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0865  methyl-accepting chemotaxis sensory transducer  43.14 
 
 
712 aa  238  3e-61  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.163995 
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  40.93 
 
 
567 aa  238  4e-61  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007925  RPC_4147  methyl-accepting chemotaxis sensory transducer  41.69 
 
 
694 aa  237  5.0000000000000005e-61  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  30.96 
 
 
688 aa  237  6e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_007958  RPD_3904  chemotaxis sensory transducer  41.1 
 
 
566 aa  235  2.0000000000000002e-60  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  41.33 
 
 
565 aa  234  4.0000000000000004e-60  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  42.78 
 
 
731 aa  234  5e-60  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_009831  Ssed_0529  methyl-accepting chemotaxis protein-like protein  27.95 
 
 
677 aa  234  6e-60  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3379  methyl-accepting chemotaxis sensory transducer  40.92 
 
 
587 aa  233  9e-60  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.787169  normal 
 
 
-
 
NC_009485  BBta_5110  hypothetical protein  42.47 
 
 
688 aa  232  2e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.791751 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  41.67 
 
 
567 aa  231  3e-59  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  38.56 
 
 
562 aa  231  3e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  41.46 
 
 
566 aa  231  3e-59  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0820  chemotaxis sensory transducer  42.78 
 
 
608 aa  231  4e-59  Methylobacterium extorquens PA1  Bacteria  normal  0.254614  normal  0.216431 
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  36.42 
 
 
542 aa  230  9e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  41.57 
 
 
552 aa  229  1e-58  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_011004  Rpal_5120  methyl-accepting chemotaxis sensory transducer  40.6 
 
 
563 aa  229  1e-58  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1293  methyl-accepting chemotaxis sensory transducer  36.65 
 
 
562 aa  228  2e-58  Rhodospirillum rubrum ATCC 11170  Bacteria  decreased coverage  0.00511002  n/a   
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  40.38 
 
 
656 aa  228  4e-58  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  40.33 
 
 
688 aa  227  5.0000000000000005e-58  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  40.21 
 
 
563 aa  226  1e-57  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  41.55 
 
 
688 aa  226  1e-57  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_007958  RPD_0337  chemotaxis sensory transducer  41.13 
 
 
563 aa  226  1e-57  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.760858  normal  0.789667 
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  40.85 
 
 
560 aa  225  2e-57  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_007778  RPB_4561  methyl-accepting chemotaxis sensory transducer  40.37 
 
 
711 aa  225  2e-57  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  39.25 
 
 
565 aa  225  2e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  40.93 
 
 
656 aa  224  3e-57  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  37.77 
 
 
573 aa  224  3e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_010511  M446_0383  methyl-accepting chemotaxis sensory transducer  40 
 
 
559 aa  224  4e-57  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.50218 
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  41.11 
 
 
561 aa  224  4e-57  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_009485  BBta_2368  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  34.53 
 
 
561 aa  223  7e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.280114 
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  40.16 
 
 
602 aa  224  7e-57  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0840  chemotaxis sensory transducer  40.26 
 
 
712 aa  224  7e-57  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.174635 
 
 
-
 
NC_009485  BBta_6717  methyl-accepting chemotaxis sensory transducer  41.05 
 
 
741 aa  223  8e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.447835  normal  0.587139 
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
689 aa  223  9e-57  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_007925  RPC_3377  methyl-accepting chemotaxis sensory transducer  37.98 
 
 
563 aa  223  9.999999999999999e-57  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.528008  normal 
 
 
-
 
NC_011757  Mchl_0779  methyl-accepting chemotaxis sensory transducer with Cache sensor  41.93 
 
 
558 aa  222  1.9999999999999999e-56  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0546434  normal  0.151916 
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  40.96 
 
 
655 aa  222  1.9999999999999999e-56  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_007958  RPD_1857  chemotaxis sensory transducer  38.71 
 
 
563 aa  222  1.9999999999999999e-56  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0581  methyl-accepting chemotaxis sensory transducer  40.97 
 
 
562 aa  221  3.9999999999999997e-56  Methylobacterium populi BJ001  Bacteria  normal  0.0281709  decreased coverage  0.00474558 
 
 
-
 
NC_007778  RPB_0489  methyl-accepting chemotaxis sensory transducer  40.37 
 
 
564 aa  221  3.9999999999999997e-56  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.301128  normal 
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  40.55 
 
 
670 aa  221  3.9999999999999997e-56  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  38.56 
 
 
566 aa  221  5e-56  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  40.16 
 
 
688 aa  221  5e-56  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_011004  Rpal_2757  methyl-accepting chemotaxis sensory transducer  39.85 
 
 
561 aa  220  7.999999999999999e-56  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0630329  n/a   
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  39.03 
 
 
577 aa  220  8.999999999999998e-56  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  40.37 
 
 
586 aa  219  1e-55  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  36.77 
 
 
565 aa  218  2.9999999999999998e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3824  methyl-accepting chemotaxis sensory transducer  41.83 
 
 
561 aa  218  2.9999999999999998e-55  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3378  methyl-accepting chemotaxis sensory transducer  38.92 
 
 
563 aa  218  2.9999999999999998e-55  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.104618  normal 
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  38.75 
 
 
566 aa  218  2.9999999999999998e-55  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_007925  RPC_4809  methyl-accepting chemotaxis sensory transducer  39.62 
 
 
563 aa  218  4e-55  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1025  methyl-accepting chemotaxis sensory transducer  36.35 
 
 
681 aa  218  4e-55  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  38.25 
 
 
563 aa  217  5e-55  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  40.21 
 
 
672 aa  217  5e-55  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0619  methyl-accepting chemotaxis sensory transducer  42.05 
 
 
561 aa  218  5e-55  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0130228 
 
 
-
 
NC_009485  BBta_7375  methyl-accepting chemotaxis sensory transducer  42.59 
 
 
655 aa  217  5.9999999999999996e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4580  methyl-accepting chemotaxis sensory transducer  41.05 
 
 
563 aa  217  5.9999999999999996e-55  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.174371  normal 
 
 
-
 
NC_007778  RPB_2983  methyl-accepting chemotaxis sensory transducer  39.69 
 
 
561 aa  217  7e-55  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0323515 
 
 
-
 
NC_009485  BBta_0885  putative methyl-accepting chemotaxis protein  40.05 
 
 
691 aa  216  9.999999999999999e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.493714  normal 
 
 
-
 
NC_011004  Rpal_1871  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.1 
 
 
716 aa  216  9.999999999999999e-55  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2484  chemotaxis sensory transducer  39.8 
 
 
563 aa  216  9.999999999999999e-55  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.1562  n/a   
 
 
-
 
NC_011004  Rpal_0924  methyl-accepting chemotaxis sensory transducer  40.43 
 
 
712 aa  216  9.999999999999999e-55  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.991242  n/a   
 
 
-
 
NC_008347  Mmar10_0713  methyl-accepting chemotaxis sensory transducer  37.96 
 
 
685 aa  216  1.9999999999999998e-54  Maricaulis maris MCS10  Bacteria  normal  normal  0.862704 
 
 
-
 
NC_007778  RPB_2653  methyl-accepting chemotaxis sensory transducer  38.5 
 
 
691 aa  216  1.9999999999999998e-54  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00184965  normal  0.0777916 
 
 
-
 
NC_010725  Mpop_2032  methyl-accepting chemotaxis sensory transducer  42.59 
 
 
558 aa  215  2.9999999999999995e-54  Methylobacterium populi BJ001  Bacteria  normal  normal  0.176129 
 
 
-
 
NC_009485  BBta_2843  putative histidine kinase, HAMP region  39.15 
 
 
682 aa  214  2.9999999999999995e-54  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3563  chemotaxis sensory transducer  37.4 
 
 
563 aa  215  2.9999999999999995e-54  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4739  methyl-accepting chemotaxis sensory transducer  42.17 
 
 
450 aa  215  2.9999999999999995e-54  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1048  methyl-accepting chemotaxis sensory transducer  37.33 
 
 
559 aa  215  2.9999999999999995e-54  Methylobacterium populi BJ001  Bacteria  normal  normal  0.165383 
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  38.24 
 
 
561 aa  214  4.9999999999999996e-54  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_007778  RPB_1316  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
561 aa  214  4.9999999999999996e-54  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.234166 
 
 
-
 
NC_010505  Mrad2831_2241  methyl-accepting chemotaxis sensory transducer  42.11 
 
 
566 aa  214  5.999999999999999e-54  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0772  methyl-accepting chemotaxis sensory transducer  35.62 
 
 
561 aa  213  9e-54  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  40.11 
 
 
674 aa  213  1e-53  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
561 aa  212  2e-53  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_007643  Rru_A2366  methyl-accepting chemotaxis sensory transducer  40.98 
 
 
560 aa  212  2e-53  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196109  n/a   
 
 
-
 
NC_007778  RPB_2961  methyl-accepting chemotaxis sensory transducer  36.5 
 
 
563 aa  212  2e-53  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1216  methyl-accepting chemotaxis sensory transducer  40.75 
 
 
562 aa  212  2e-53  Methylobacterium populi BJ001  Bacteria  normal  0.743011  normal  0.567814 
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  39.24 
 
 
674 aa  212  2e-53  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_009485  BBta_0330  putative methyl-accepting chemotaxis receptor/sensory transducer  39.73 
 
 
676 aa  212  2e-53  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0869057 
 
 
-
 
NC_007643  Rru_A1408  chemotaxis sensory transducer  39.1 
 
 
568 aa  211  3e-53  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.591131  n/a   
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  39.51 
 
 
656 aa  211  3e-53  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  40.21 
 
 
561 aa  211  3e-53  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_011757  Mchl_3471  methyl-accepting chemotaxis sensory transducer  35.47 
 
 
561 aa  211  4e-53  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.130295  normal 
 
 
-
 
NC_010172  Mext_3147  chemotaxis sensory transducer  35.66 
 
 
561 aa  211  4e-53  Methylobacterium extorquens PA1  Bacteria  normal  0.0908078  normal 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  39.95 
 
 
563 aa  210  6e-53  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_007958  RPD_0336  chemotaxis sensory transducer  41.14 
 
 
563 aa  210  9e-53  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1766  methyl-accepting chemotaxis sensory transducer  41.93 
 
 
575 aa  209  1e-52  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  37.96 
 
 
673 aa  209  1e-52  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_009485  BBta_2900  putative methyl-accepting chemotaxis receptor/sensory transducer (chemoreceptor)  39.95 
 
 
675 aa  210  1e-52  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142675  normal  0.173139 
 
 
-
 
NC_009485  BBta_0644  putative methyl-accepting chemotaxis receptor/sensory transducer  40.31 
 
 
565 aa  209  1e-52  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
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