| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0529 |
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| Symbol | |
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| ID | 5613212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 645332 |
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| End bp | 647365 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931374 |
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| Product | methyl-accepting chemotaxis protein-like protein |
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| Protein accession | YP_001472269 |
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| Protein GI | 157373669 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCCA TCTTGAATTT GACCGTAAGG CTCAAATTAC TACTGGGTTT TGGCTTAGTT
ATCGCAATTT TCATCATAAG CTCGAGCATA GTTTATACGC AGCTGCAAGA CATCAACACC
ACACAAAGTC GGCTGTTAGA ACTCAGGACG CCCACAGTAC AGGCCGGAAT GAATCTTGAG
GCCGCAATAA CTCAAACTTT ATCAGGCCTG AGGGGCTACC TTATTCTTGG CGGCGATCCA
AGCAAGGCTA AGCTATTCAA GGACGAACGA GCCCAGGGCT GGGATAAATT AGAGCAATCC
CTCATGACTC TGGAGGGTTT TGCCAAAAAT TGGACCGTCC CCAGAAACAT AGAGCGGCTC
AATGAGATGA AAATGATTAT CCGCCAGTTT AAGCAGGCAC AGCAGCAGAT TGAGGATATC
GCTCATACAG ATAAAAACAT CCCCTCTTTC GATATTCTCC TCACTAAAGC AGCACCAACG
GCGGCCAGAA CCCTGACCGC ACTAACCGCT ATCATAGAGA GTGAAATGGC TAATCCAAGT
GATATCGAAC ATAAGCGATT CCTCAAAACC TTAGCCGACA GCCGGGCTGC ATTTGCCATG
GGTTTAGCAA ATATTCGGGC ATACTTACTT TCCGGCGAGC TTAAGTTCAA GAACAACTAC
TTAGAACTAA AGGGCAGAAG CGATAGCTTA ATGCTGGATC TCGAAAGTTC AATTGACTTG
ATGTCGGTAG AACAAAGAGA ACAATGGGAT AGTTTTAAGC TGGCCAGAAG CGAGTTTGCC
CCCTATGTAA TACAGATGTT TGGTTCTCGC TCCAGCGCCG AATGGAACCA GGCTAACCAT
TGGCTAGGTA CATTAGCGGC ACCTAGAGCC CGTAAGATAA AGAGTATCCT GGAAGAGATG
CGAACCTCCC AGGCAAACCT ATTTAAAGCC GATCAGCGGA GCCTGACCGA AGCGAGTGAC
ACATTGAACT TTGTCTTACT CCTTTCTGGC GTGCTAACGA TCATATTCGG TGCTGTTATC
GCAGTTGCTA TCAGTCAATC TGTCACCCGG CCACTGGGTG GTGAACCGGC TGAAATGGTC
AACATTGCCA ACAGCATAGC CGAAGGAGAC CTGACCTTAC GCTTTACCCA TGCCGCCAAT
GCGAAAGGCT TGTATCTGTC TATGTATAAG ATGCACGCCA AGCTAAAAGA GTTGGTCAGC
AACATAGCCG GTGCTGCCGA ACAGTTAACC GATACCGCCG TTCAAACTTC GGGGATGTCT
GAGCAGACCA ATAACAATGT TCAAGATCAG TTCCAGCAGA CAGAGTTGGT CGCCACCGCA
GTTGAGGAGA TGACAGTCAC AGTCAACGAA GTTAGCCTCA ACGCCTCTAA CTGCCTCAGC
GTGATACAGG AATCTGAAAC AACCATTAAA GAGGGGCAGG AAAATGTCCT GCAAACGGTT
GGTAATGTTG AAAAGCTTGC AAGCGATATC AACGACGCCA CAGGGGTAAT ACTATCTCTG
CAGGAGAAGA GCGCCGAAAT AAACTCGGTC TCCGAGGTGA TAGGCAGCAT AGCCGAGCAG
ACTAACCTGC TGGCCTTAAA TGCCGCCATC GAAGCTGCAA GGGCTGGAGA GCAGGGACGA
GGGTTTGCCG TGGTCGCTGA TGAGGTCAGA GCCCTCGCCT CCAAGACTCA GGAGTCGATA
TCGAGTATTA ACTCCGTTAT TCTGTCGCTC CAGCAAAGTG CTGATGAAGC TGCCACGGCG
ATGCAGTCGA GCCAAAACAG TGCTGAAAAT ACTATATCTG AAGCGAGGAG CTCCGGTGAG
TCACTCTCAA AAATAGCCGA GTCGAGCCGG CAGATTGTCG ATATGGCGAG TCAAATATCC
GTAGCGTCAG AGGAGCAGGC AAGCGTGACC TTAGATATCA GTCAAAACGT ACAGATGATC
AGAAGCGGAG CGGAGCAGAC ATCGATTGGT GCATCCGAGA TGGTTAAGAC CAGTGAACAG
CTGTCGACCC AGGCTAACAG CTTAAAATCT ATGGTCGCCT CATTTCGTTA TTAA
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| Protein sequence | MDAILNLTVR LKLLLGFGLV IAIFIISSSI VYTQLQDINT TQSRLLELRT PTVQAGMNLE
AAITQTLSGL RGYLILGGDP SKAKLFKDER AQGWDKLEQS LMTLEGFAKN WTVPRNIERL
NEMKMIIRQF KQAQQQIEDI AHTDKNIPSF DILLTKAAPT AARTLTALTA IIESEMANPS
DIEHKRFLKT LADSRAAFAM GLANIRAYLL SGELKFKNNY LELKGRSDSL MLDLESSIDL
MSVEQREQWD SFKLARSEFA PYVIQMFGSR SSAEWNQANH WLGTLAAPRA RKIKSILEEM
RTSQANLFKA DQRSLTEASD TLNFVLLLSG VLTIIFGAVI AVAISQSVTR PLGGEPAEMV
NIANSIAEGD LTLRFTHAAN AKGLYLSMYK MHAKLKELVS NIAGAAEQLT DTAVQTSGMS
EQTNNNVQDQ FQQTELVATA VEEMTVTVNE VSLNASNCLS VIQESETTIK EGQENVLQTV
GNVEKLASDI NDATGVILSL QEKSAEINSV SEVIGSIAEQ TNLLALNAAI EAARAGEQGR
GFAVVADEVR ALASKTQESI SSINSVILSL QQSADEAATA MQSSQNSAEN TISEARSSGE
SLSKIAESSR QIVDMASQIS VASEEQASVT LDISQNVQMI RSGAEQTSIG ASEMVKTSEQ
LSTQANSLKS MVASFRY
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