More than 300 homologs were found in PanDaTox collection
for query gene Mmwyl1_1933 on replicon NC_009654
Organism: Marinomonas sp. MWYL1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009654  Mmwyl1_1933  response regulator receiver modulated diguanylate cyclase  100 
 
 
411 aa  835    Marinomonas sp. MWYL1  Bacteria  normal  0.380329  normal 
 
 
-
 
NC_011138  MADE_03374  Response regulator containing a CheY-like receiver domain and a GGDEF domain  48.77 
 
 
419 aa  399  9.999999999999999e-111  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.67607  n/a   
 
 
-
 
NC_009439  Pmen_0478  response regulator receiver modulated diguanylate cyclase  43.6 
 
 
422 aa  332  7.000000000000001e-90  Pseudomonas mendocina ymp  Bacteria  normal  0.60604  normal 
 
 
-
 
NC_009831  Ssed_1723  diguanylate cyclase  42.14 
 
 
420 aa  324  1e-87  Shewanella sediminis HAW-EB3  Bacteria  normal  0.428268  hitchhiker  0.00000158997 
 
 
-
 
NC_010506  Swoo_2855  response regulator receiver modulated diguanylate cyclase  41.69 
 
 
415 aa  319  6e-86  Shewanella woodyi ATCC 51908  Bacteria  normal  0.220747  hitchhiker  0.000676798 
 
 
-
 
NC_008345  Sfri_2466  diguanylate cyclase  42.55 
 
 
406 aa  314  9.999999999999999e-85  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0503371  n/a   
 
 
-
 
NC_007954  Sden_2518  GGDEF domain-containing protein  42.27 
 
 
407 aa  308  1.0000000000000001e-82  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1511  response regulator receiver protein  42.58 
 
 
416 aa  303  3.0000000000000004e-81  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1684  response regulator receiver modulated diguanylate cyclase  43.39 
 
 
400 aa  292  9e-78  Shewanella pealeana ATCC 700345  Bacteria  normal  0.16221  n/a   
 
 
-
 
NC_007912  Sde_0621  response regulator receiver modulated diguanylate cyclase  39.42 
 
 
415 aa  290  2e-77  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.649156 
 
 
-
 
NC_007643  Rru_A0085  response regulator receiver modulated diguanylate cyclase  38.69 
 
 
453 aa  284  2.0000000000000002e-75  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0659  diguanylate cyclase  37.41 
 
 
417 aa  282  1e-74  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.0149639  n/a   
 
 
-
 
NC_009783  VIBHAR_03265  hypothetical protein  40.34 
 
 
403 aa  273  5.000000000000001e-72  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007498  Pcar_0581  response regulator  35.66 
 
 
417 aa  264  2e-69  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000040809  n/a   
 
 
-
 
NC_007575  Suden_1780  diguanylate cyclase  36.93 
 
 
414 aa  252  9.000000000000001e-66  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3346  response regulator/GGDEF domain-containing protein  35.12 
 
 
417 aa  249  8e-65  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2407  response regulator receiver modulated diguanylate cyclase  34.93 
 
 
443 aa  247  2e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0296488 
 
 
-
 
NC_008789  Hhal_2233  response regulator receiver modulated diguanylate cyclase  35.78 
 
 
428 aa  247  3e-64  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4080  diguanylate cyclase  34.39 
 
 
418 aa  240  2.9999999999999997e-62  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2323  response regulator receiver modulated diguanylate cyclase  34.69 
 
 
445 aa  239  5e-62  Desulfovibrio vulgaris DP4  Bacteria  normal  0.123075  unclonable  0.0000172862 
 
 
-
 
NC_003910  CPS_0081  response regulator/GGDEF domain-containing protein  35.35 
 
 
419 aa  239  5.999999999999999e-62  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00466  Putative two-component system regulatory protein with GGDEF domain  33.74 
 
 
414 aa  238  1e-61  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.6149  n/a   
 
 
-
 
NC_009715  CCV52592_0462  3-deoxy-d-manno-octulosonic-acid transferase  33.82 
 
 
422 aa  237  3e-61  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2153  response regulator receiver modulated diguanylate cyclase  34.93 
 
 
443 aa  236  4e-61  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.257798  normal  0.276429 
 
 
-
 
NC_011138  MADE_00199  response regulator/GGDEF domain protein  33.65 
 
 
426 aa  236  7e-61  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1193  diguanylate cyclase  32.93 
 
 
415 aa  233  5e-60  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1334  response regulator receiver modulated diguanylate cyclase  34.05 
 
 
447 aa  227  3e-58  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  32.85 
 
 
418 aa  222  9.999999999999999e-57  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_008751  Dvul_2852  response regulator receiver protein  41.34 
 
 
268 aa  203  4e-51  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3514  response regulator receiver modulated diguanylate cyclase  31.64 
 
 
427 aa  202  6e-51  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0178  response regulator receiver domain-containing protein  39 
 
 
272 aa  195  1e-48  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0180  response regulator receiver domain-containing protein  40.31 
 
 
273 aa  192  1e-47  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE0746  response regulator/GGDEF domain-containing protein  31.08 
 
 
414 aa  187  4e-46  Campylobacter jejuni RM1221  Bacteria  normal  0.0447686  n/a   
 
 
-
 
NC_008787  CJJ81176_0671  response regulator/GGDEF domain-containing protein  31.08 
 
 
414 aa  187  4e-46  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1937  response regulator receiver protein  41.13 
 
 
269 aa  187  4e-46  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_0579  response regulator receiver sensor signal transduction histidine kinase  40.15 
 
 
487 aa  184  2.0000000000000003e-45  Desulfovibrio vulgaris DP4  Bacteria  normal  0.721447  normal 
 
 
-
 
NC_009707  JJD26997_1356  response regulator/GGDEF domain-containing protein  30.27 
 
 
414 aa  183  4.0000000000000006e-45  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  38.08 
 
 
500 aa  182  7e-45  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011369  Rleg2_2154  response regulator receiver protein  35.86 
 
 
268 aa  171  2e-41  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.193377  normal  0.527206 
 
 
-
 
NC_011989  Avi_2726  two component response regulator  35.92 
 
 
277 aa  166  1.0000000000000001e-39  Agrobacterium vitis S4  Bacteria  normal  0.54081  n/a   
 
 
-
 
NC_009636  Smed_1795  response regulator receiver protein  35.69 
 
 
274 aa  162  8.000000000000001e-39  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00918371  hitchhiker  0.000651153 
 
 
-
 
NC_012850  Rleg_2408  response regulator receiver protein  34.26 
 
 
276 aa  162  8.000000000000001e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.10805 
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  36.89 
 
 
1691 aa  161  2e-38  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_0652  two component response regulator  28.07 
 
 
414 aa  150  3e-35  Campylobacter lari RM2100  Bacteria  normal  0.267728  n/a   
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  37.13 
 
 
526 aa  147  4.0000000000000006e-34  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_002939  GSU2313  response regulator  32.66 
 
 
301 aa  146  7.0000000000000006e-34  Geobacter sulfurreducens PCA  Bacteria  normal  0.483613  n/a   
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  32.45 
 
 
314 aa  145  1e-33  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2693  diguanylate cyclase  31.62 
 
 
302 aa  132  1.0000000000000001e-29  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  27.44 
 
 
457 aa  132  1.0000000000000001e-29  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
309 aa  130  4.0000000000000003e-29  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_013889  TK90_1372  response regulator receiver modulated diguanylate cyclase  27.97 
 
 
436 aa  126  6e-28  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.738866  normal  0.941955 
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  31 
 
 
310 aa  125  1e-27  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  30.3 
 
 
312 aa  125  2e-27  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2023  response regulator receiver modulated diguanylate cyclase  31.37 
 
 
312 aa  123  5e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.174701  normal 
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  30.89 
 
 
316 aa  121  3e-26  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  31.31 
 
 
317 aa  121  3e-26  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  31.31 
 
 
317 aa  121  3e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_0841  response regulator receiver modulated diguanylate cyclase  29.66 
 
 
715 aa  120  3.9999999999999996e-26  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.101081  normal 
 
 
-
 
NC_010725  Mpop_1933  response regulator receiver modulated diguanylate cyclase  33.56 
 
 
298 aa  120  4.9999999999999996e-26  Methylobacterium populi BJ001  Bacteria  normal  0.964426  normal  0.0629546 
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  30.03 
 
 
322 aa  119  9e-26  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  31.1 
 
 
314 aa  119  9.999999999999999e-26  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  29.74 
 
 
322 aa  119  9.999999999999999e-26  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1507  response regulator receiver modulated diguanylate cyclase  28.81 
 
 
308 aa  117  1.9999999999999998e-25  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.914031 
 
 
-
 
NC_013739  Cwoe_3139  response regulator receiver modulated diguanylate cyclase  29.19 
 
 
676 aa  118  1.9999999999999998e-25  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.990746 
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  29.52 
 
 
351 aa  118  1.9999999999999998e-25  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  28.98 
 
 
317 aa  117  3.9999999999999997e-25  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  31.31 
 
 
316 aa  116  6e-25  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_0218  diguanylate cyclase  29.19 
 
 
304 aa  116  7.999999999999999e-25  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  31.25 
 
 
308 aa  115  1.0000000000000001e-24  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3505  response regulator receiver modulated diguanylate cyclase  28.41 
 
 
665 aa  115  1.0000000000000001e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1382  response regulator receiver protein  30.3 
 
 
302 aa  115  2.0000000000000002e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2463  response regulator receiver modulated diguanylate cyclase  31.13 
 
 
301 aa  115  2.0000000000000002e-24  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3005  response regulator receiver modulated diguanylate cyclase  29.28 
 
 
303 aa  115  2.0000000000000002e-24  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.000288968 
 
 
-
 
NC_008228  Patl_3669  diguanylate cyclase  31.48 
 
 
300 aa  114  2.0000000000000002e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0119902  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  28.67 
 
 
301 aa  114  3e-24  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  28.28 
 
 
917 aa  113  5e-24  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  28.99 
 
 
322 aa  113  5e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  30 
 
 
319 aa  113  8.000000000000001e-24  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1978  diguanylate cyclase  31.85 
 
 
298 aa  112  1.0000000000000001e-23  Methylobacterium extorquens PA1  Bacteria  normal  0.148602  normal 
 
 
-
 
NC_008577  Shewana3_2212  response regulator receiver modulated diguanylate cyclase  27.3 
 
 
543 aa  111  2.0000000000000002e-23  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0365  response regulator receiver modulated diguanylate cyclase  29 
 
 
308 aa  111  2.0000000000000002e-23  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  27.52 
 
 
310 aa  111  2.0000000000000002e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0119  response regulator receiver modulated diguanylate cyclase  29.84 
 
 
324 aa  112  2.0000000000000002e-23  Maricaulis maris MCS10  Bacteria  normal  0.969085  normal 
 
 
-
 
NC_011901  Tgr7_2459  response regulator receiver modulated diguanylate cyclase  27.85 
 
 
335 aa  111  3e-23  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.685644  n/a   
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  26.27 
 
 
457 aa  111  3e-23  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_009675  Anae109_3583  response regulator receiver modulated diguanylate cyclase  30.26 
 
 
322 aa  110  3e-23  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.000864033 
 
 
-
 
NC_007413  Ava_2421  response regulator receiver modulated diguanylate cyclase  27.42 
 
 
684 aa  110  4.0000000000000004e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.0000243595 
 
 
-
 
NC_011757  Mchl_2255  response regulator receiver modulated diguanylate cyclase  31.85 
 
 
298 aa  110  4.0000000000000004e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2815  response regulator receiver modulated diguanylate cyclase  26.14 
 
 
457 aa  110  4.0000000000000004e-23  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.631579  normal  0.0857187 
 
 
-
 
NC_007520  Tcr_1108  diguanylate cyclase  25.88 
 
 
454 aa  110  5e-23  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05729  putative diguanylate cyclase  32.09 
 
 
323 aa  109  8.000000000000001e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  30.56 
 
 
419 aa  109  8.000000000000001e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1484  response regulator receiver modulated diguanylate cyclase  26.98 
 
 
555 aa  109  8.000000000000001e-23  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0158649 
 
 
-
 
NC_010505  Mrad2831_0755  response regulator receiver modulated diguanylate cyclase  30.38 
 
 
298 aa  109  9.000000000000001e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.893944 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  31.06 
 
 
337 aa  109  1e-22  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_008321  Shewmr4_2087  response regulator receiver modulated diguanylate cyclase  28.07 
 
 
544 aa  109  1e-22  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1887  response regulator receiver modulated diguanylate cyclase  28.07 
 
 
544 aa  109  1e-22  Shewanella sp. MR-7  Bacteria  normal  normal  0.374169 
 
 
-
 
NC_008345  Sfri_2812  diguanylate cyclase  31.61 
 
 
315 aa  108  1e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  31.15 
 
 
306 aa  108  2e-22  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1706  response regulator receiver modulated diguanylate cyclase  29.58 
 
 
324 aa  108  2e-22  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
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