More than 300 homologs were found in PanDaTox collection
for query gene Smed_4816 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009620  Smed_4816  response regulator receiver protein  100 
 
 		 248 aa  495  1e-139  Sinorhizobium medicae WSM419  Bacteria  normal  0.890736  normal  0.794324 
 
 
-
 
NC_011369  Rleg2_3999  transcriptional regulator, LuxR family  30.99 
 
 		 260 aa  118  9e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0000000117104  normal  1 
 
 
-
 
NC_012850  Rleg_4328  transcriptional regulator, LuxR family  31.8 
 
 		 260 aa  117  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00000000127099  normal  0.0225245 
 
 
-
 
NC_009636  Smed_2837  response regulator receiver protein  39.38 
 
 		 262 aa  100  3e-20  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000311945  normal  0.812847 
 
 
-
 
NC_008687  Pden_4339  response regulator receiver protein  43.09 
 
 		 233 aa  88.2  1e-16  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  32.77 
 
 		 227 aa  79  0.00000000000007  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_008254  Meso_2574  two component LuxR family transcriptional regulator  31.84 
 
 		 253 aa  78.2  0.0000000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3972  two component LuxR family transcriptional regulator  32.18 
 
 		 251 aa  76.3  0.0000000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.111106  n/a   
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  32.43 
 
 		 245 aa  73.2  0.000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal  1 
 
 
-
 
NC_007493  RSP_0316  LuxR family transcriptional regulator  32.4 
 
 		 213 aa  72.8  0.000000000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.155222  n/a   
 
 
-
 
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  36.07 
 
 		 259 aa  72.8  0.000000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal  1 
 
 
-
 
NC_011369  Rleg2_0250  two component transcriptional regulator, LuxR family  29.8 
 
 		 260 aa  72.8  0.000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.664516  normal  1 
 
 
-
 
NC_009049  Rsph17029_1961  response regulator receiver protein  30.51 
 
 		 247 aa  72.4  0.000000000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  32.77 
 
 		 241 aa  72  0.000000000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_009620  Smed_4826  two component LuxR family transcriptional regulator  32.54 
 
 		 267 aa  70.5  0.00000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.847801  normal  0.0520322 
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  34.75 
 
 		 258 aa  70.9  0.00000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_004311  BRA0415  LuxR family transcriptional regulator  33.05 
 
 		 255 aa  68.6  0.00000000009  Brucella suis 1330  Bacteria  normal  0.272996  n/a   
 
 
-
 
NC_009504  BOV_A0358  LuxR family transcriptional regulator  33.05 
 
 		 255 aa  68.6  0.00000000009  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_0978  two component LuxR family transcriptional regulator  38.02 
 
 		 247 aa  68.2  0.0000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.159022  normal  1 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  27.78 
 
 		 208 aa  67.8  0.0000000002  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_3459  ATP-dependent transcriptional regulator, MalT- like, LuxR family  57.14 
 
 		 901 aa  66.6  0.0000000004  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.000984222  hitchhiker  0.00326143 
 
 
-
 
NC_007406  Nwi_0957  LuxR family transcriptional regulator  32.8 
 
 		 342 aa  66.2  0.0000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.553991  normal  0.407109 
 
 
-
 
NC_014158  Tpau_1410  two component transcriptional regulator, LuxR family  37.88 
 
 		 222 aa  65.9  0.0000000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.46664  n/a   
 
 
-
 
NC_007964  Nham_2943  two component LuxR family transcriptional regulator  32 
 
 		 351 aa  66.2  0.0000000005  Nitrobacter hamburgensis X14  Bacteria  normal  0.692808  n/a   
 
 
-
 
NC_012852  Rleg_6225  two component transcriptional regulator, LuxR family  28.42 
 
 		 258 aa  65.9  0.0000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.173155 
 
 
-
 
NC_007404  Tbd_2786  two component LuxR family transcriptional regulator  45.35 
 
 		 210 aa  65.5  0.0000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0443035  normal  0.922606 
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  42.05 
 
 		 203 aa  65.5  0.0000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal  1 
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  33.33 
 
 		 275 aa  65.1  0.000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal  1 
 
 
-
 
NC_007348  Reut_B4759  regulatory protein, LuxR  61.4 
 
 		 913 aa  65.1  0.000000001  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  31.72 
 
 		 213 aa  65.1  0.000000001  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  34.21 
 
 		 221 aa  64.7  0.000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  32.91 
 
 		 221 aa  64.3  0.000000002  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011371  Rleg2_6421  two component transcriptional regulator, LuxR family  28.42 
 
 		 251 aa  63.9  0.000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal  1 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  30.61 
 
 		 216 aa  63.9  0.000000002  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008541  Arth_2136  two component LuxR family transcriptional regulator  44.16 
 
 		 254 aa  64.3  0.000000002  Arthrobacter sp. FB24  Bacteria  normal  0.0553154  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  34.21 
 
 		 221 aa  64.3  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_3836  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  63.5  0.000000003  Shewanella baltica OS195  Bacteria  hitchhiker  0.00000136397  normal  0.0231387 
 
 
-
 
NC_009665  Shew185_3713  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  63.5  0.000000003  Shewanella baltica OS185  Bacteria  hitchhiker  0.000000000161759  n/a   
 
 
-
 
NC_011663  Sbal223_3654  two component transcriptional regulator, LuxR family  33.33 
 
 		 209 aa  63.5  0.000000003  Shewanella baltica OS223  Bacteria  unclonable  0.000000000464283  hitchhiker  0.00000781977 
 
 
-
 
NC_009052  Sbal_0792  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  63.5  0.000000003  Shewanella baltica OS155  Bacteria  hitchhiker  0.000000151034  n/a   
 
 
-
 
NC_009523  RoseRS_0799  response regulator receiver protein  52.46 
 
 		 204 aa  63.5  0.000000003  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.403434 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  36.19 
 
 		 226 aa  63.5  0.000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_008321  Shewmr4_0657  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  62.8  0.000000004  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000493749  normal  0.229808 
 
 
-
 
NC_008322  Shewmr7_3365  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  62.8  0.000000004  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000651556  normal  0.0242167 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  40.43 
 
 		 229 aa  63.2  0.000000004  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_0656  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  62.8  0.000000004  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000830399  normal  0.140804 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  35.19 
 
 		 210 aa  63.2  0.000000004  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_1309  two component LuxR family transcriptional regulator  35.45 
 
 		 206 aa  62.8  0.000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000148999  n/a   
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  36.79 
 
 		 212 aa  62.8  0.000000005  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  62.4  0.000000006  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal  1 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  50 
 
 		 226 aa  62.4  0.000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_011886  Achl_2073  two component transcriptional regulator, LuxR family  41.38 
 
 		 226 aa  62.4  0.000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000764485 
 
 
-
 
NC_009438  Sputcn32_0683  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  62.4  0.000000007  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000388278  n/a   
 
 
-
 
NC_013169  Ksed_04030  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.35 
 
 		 223 aa  62.4  0.000000007  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.253855  normal  0.0592312 
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  34.62 
 
 		 206 aa  62.4  0.000000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal  1 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  29.82 
 
 		 212 aa  62  0.000000009  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_3982  DNA-binding nitrate/nitrite response regulator  33.33 
 
 		 209 aa  62  0.00000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  30.7 
 
 		 230 aa  61.2  0.00000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A3176  two component LuxR family transcriptional regulator  37.5 
 
 		 292 aa  61.6  0.00000001  Burkholderia xenovorans LB400  Bacteria  normal  0.0570221  normal  0.472976 
 
 
-
 
NC_009767  Rcas_1228  LuxR family transcriptional regulator  51.67 
 
 		 204 aa  61.2  0.00000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.118696  normal  1 
 
 
-
 
NC_008254  Meso_2457  LuxR family transcriptional regulator  57.41 
 
 		 554 aa  61.6  0.00000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  42.55 
 
 		 218 aa  60.5  0.00000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  29.61 
 
 		 215 aa  60.8  0.00000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  32.08 
 
 		 209 aa  60.8  0.00000002  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  35.19 
 
 		 267 aa  60.8  0.00000002  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  36.27 
 
 		 213 aa  60.8  0.00000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  34.78 
 
 		 263 aa  60.5  0.00000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  31.09 
 
 		 213 aa  60.8  0.00000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_010172  Mext_3579  regulatory protein LuxR  37.86 
 
 		 213 aa  60.8  0.00000002  Methylobacterium extorquens PA1  Bacteria  normal  0.0227422  normal  1 
 
 
-
 
NC_010725  Mpop_4862  two component transcriptional regulator, LuxR family  31.05 
 
 		 215 aa  60.5  0.00000002  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.146847 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  29.94 
 
 		 222 aa  60.1  0.00000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  36.13 
 
 		 227 aa  60.5  0.00000003  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  32.93 
 
 		 226 aa  60.5  0.00000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_008700  Sama_0646  response regulator receiver protein  34.45 
 
 		 209 aa  60.5  0.00000003  Shewanella amazonensis SB2B  Bacteria  normal  0.0492071  normal  1 
 
 
-
 
NC_012669  Bcav_3804  two component transcriptional regulator, LuxR family  32.2 
 
 		 216 aa  60.1  0.00000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.185264  normal  1 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  31.94 
 
 		 215 aa  59.7  0.00000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_2842  transcriptional regulator, LuxR family  51.95 
 
 		 492 aa  60.1  0.00000004  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  34.26 
 
 		 210 aa  59.7  0.00000004  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_011886  Achl_1794  transcriptional regulator, LuxR family  50.82 
 
 		 537 aa  60.1  0.00000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000000182459 
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  33.33 
 
 		 209 aa  59.7  0.00000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal  1 
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  33.61 
 
 		 209 aa  59.7  0.00000004  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_009511  Swit_0926  regulatory protein, LuxR  51.67 
 
 		 878 aa  59.3  0.00000005  Sphingomonas wittichii RW1  Bacteria  normal  0.289088  normal  1 
 
 
-
 
NC_013131  Caci_8304  transcriptional regulator, LuxR family  39 
 
 		 1084 aa  59.3  0.00000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  31.51 
 
 		 227 aa  59.3  0.00000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_008541  Arth_3710  LuxR family transcriptional regulator  52.83 
 
 		 426 aa  59.3  0.00000006  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  31.43 
 
 		 226 aa  59.3  0.00000006  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal  1 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  32.64 
 
 		 215 aa  58.9  0.00000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  47.27 
 
 		 227 aa  58.9  0.00000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  40.7 
 
 		 210 aa  58.9  0.00000007  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  32.69 
 
 		 207 aa  58.9  0.00000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_009511  Swit_4199  regulatory protein, LuxR  50.75 
 
 		 855 aa  58.5  0.00000008  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.142655 
 
 
-
 
NC_013595  Sros_7211  response regulator receiver protein  36.27 
 
 		 215 aa  58.9  0.00000008  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.0769384 
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  49.23 
 
 		 208 aa  58.9  0.00000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_009831  Ssed_0929  two component LuxR family transcriptional regulator  34.45 
 
 		 209 aa  58.5  0.00000009  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000567962  normal  1 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  51.79 
 
 		 214 aa  58.5  0.00000009  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  53.85 
 
 		 242 aa  58.5  0.00000009  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  40 
 
 		 224 aa  57.8  0.0000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_013093  Amir_1617  two component transcriptional regulator, LuxR family  46.55 
 
 		 214 aa  58.5  0.0000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.321528  n/a   
 
 
-
 
NC_008009  Acid345_2902  LuxR family transcriptional regulator  49.15 
 
 		 153 aa  57.8  0.0000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  37.36 
 
 		 237 aa  58.5  0.0000001  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
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