| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0929 |
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| Symbol | |
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| ID | 5612121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1110782 |
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| End bp | 1111411 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931777 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001472668 |
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| Protein GI | 157374068 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000567962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTAAGC CATATTCCGT TCTCGTTGTC GATGATCACC CACTGTTACG CCGTGGGATA
TGCCAACTAA TCACCTCTGA TTCAGATTTT ACCCTCTTTG GTGAGGCTGG TAGTGGTTTA
GACGCGCTTT CTGCCACCGA AGAAAATGAA CCCGATATTG TCCTCTTAGA TCTTAATATG
AAAGGCATGA CGGGTCTCGA TACACTCAAT GGTTTACGCC AAGAGGGCGT GACATCACGC
ATTGTCATTC TAACTGTATC CGATGCAAAA CAAGATGTTA TCCGTTTGGT AAGGGCTGGA
GCCGATGGCT ATCTGTTAAA GGATACTGAG CCGGATCTGT TACTGGAAAA GCTTAAGAAT
GCGATGCAGG GCCACAGGGT GATCAGCGAA TCGGTCGAAG ATTTTCTTTA TGAGTTAAAA
GATGCTGCCG AAGAGGAGGA GTGGCTGAAT AACCTGACTC CAAGAGAGCT GCAGATTTTA
CAGCAGGTAG CCGAAGGGAA GAGTAATCGA GTGATCTCAG AGCTACTGCA CATTAGCGAA
GGAACGGTAA AGGTTCATGT AAAGAACCTG CTGAGAAAAG CCAATGCGAA ATCTAGAACT
GAGATGGCGG TAAGATACTT AAATCAATAA
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| Protein sequence | MGKPYSVLVV DDHPLLRRGI CQLITSDSDF TLFGEAGSGL DALSATEENE PDIVLLDLNM
KGMTGLDTLN GLRQEGVTSR IVILTVSDAK QDVIRLVRAG ADGYLLKDTE PDLLLEKLKN
AMQGHRVISE SVEDFLYELK DAAEEEEWLN NLTPRELQIL QQVAEGKSNR VISELLHISE
GTVKVHVKNL LRKANAKSRT EMAVRYLNQ
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