More than 300 homologs were found in PanDaTox collection
for query gene Smed_4826 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009620  Smed_4826  two component LuxR family transcriptional regulator  100 
 
 		 267 aa  551  1e-156  Sinorhizobium medicae WSM419  Bacteria  normal  0.847801  normal  0.0520322 
 
 
-
 
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  58.22 
 
 		 259 aa  264  8.999999999999999e-70  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal  1 
 
 
-
 
NC_012852  Rleg_6225  two component transcriptional regulator, LuxR family  53.42 
 
 		 258 aa  261  6.999999999999999e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.173155 
 
 
-
 
NC_011371  Rleg2_6421  two component transcriptional regulator, LuxR family  54.03 
 
 		 251 aa  255  6e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal  1 
 
 
-
 
NC_004311  BRA0415  LuxR family transcriptional regulator  52.75 
 
 		 255 aa  233  2.0000000000000002e-60  Brucella suis 1330  Bacteria  normal  0.272996  n/a   
 
 
-
 
NC_009504  BOV_A0358  LuxR family transcriptional regulator  52.75 
 
 		 255 aa  233  2.0000000000000002e-60  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  51.83 
 
 		 258 aa  230  2e-59  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_008254  Meso_2574  two component LuxR family transcriptional regulator  53.81 
 
 		 253 aa  219  3e-56  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_1961  response regulator receiver protein  46.3 
 
 		 247 aa  181  9.000000000000001e-45  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_0978  two component LuxR family transcriptional regulator  47.47 
 
 		 247 aa  179  2.9999999999999997e-44  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.159022  normal  1 
 
 
-
 
NC_007493  RSP_0316  LuxR family transcriptional regulator  46.01 
 
 		 213 aa  177  1e-43  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.155222  n/a   
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  42.52 
 
 		 241 aa  165  5.9999999999999996e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_2943  two component LuxR family transcriptional regulator  40.71 
 
 		 351 aa  165  5.9999999999999996e-40  Nitrobacter hamburgensis X14  Bacteria  normal  0.692808  n/a   
 
 
-
 
NC_007406  Nwi_0957  LuxR family transcriptional regulator  41.12 
 
 		 342 aa  155  6e-37  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.553991  normal  0.407109 
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  39.45 
 
 		 275 aa  151  1e-35  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal  1 
 
 
-
 
NC_009050  Rsph17029_3701  two component LuxR family transcriptional regulator  36.4 
 
 		 253 aa  144  2e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.567008  normal  0.770716 
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  36.97 
 
 		 267 aa  114  2.0000000000000002e-24  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3972  two component LuxR family transcriptional regulator  30.77 
 
 		 251 aa  96.3  4e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.111106  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  33.18 
 
 		 227 aa  95.5  9e-19  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_011369  Rleg2_0250  two component transcriptional regulator, LuxR family  28.51 
 
 		 260 aa  92.8  5e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.664516  normal  1 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  32.06 
 
 		 232 aa  88.6  9e-17  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  29.33 
 
 		 245 aa  87.8  2e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal  1 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  33.18 
 
 		 221 aa  86.3  5e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  31.13 
 
 		 215 aa  83.2  0.000000000000004  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  32.2 
 
 		 214 aa  82.8  0.000000000000005  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  40.3 
 
 		 216 aa  82.8  0.000000000000005  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  28.31 
 
 		 217 aa  82.4  0.000000000000006  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  31.74 
 
 		 243 aa  82.8  0.000000000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  34.67 
 
 		 219 aa  80.9  0.00000000000002  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  36.43 
 
 		 201 aa  80.9  0.00000000000002  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  35.17 
 
 		 218 aa  80.1  0.00000000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  29.49 
 
 		 227 aa  79  0.00000000000007  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  30.14 
 
 		 218 aa  79  0.00000000000008  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  30.14 
 
 		 218 aa  79  0.00000000000008  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  26.44 
 
 		 227 aa  78.6  0.0000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  33.57 
 
 		 218 aa  78.2  0.0000000000001  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  27.8 
 
 		 208 aa  77  0.0000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  28.63 
 
 		 222 aa  77  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  28.44 
 
 		 216 aa  76.6  0.0000000000004  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  28.57 
 
 		 210 aa  76.3  0.0000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  27.65 
 
 		 224 aa  75.9  0.0000000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  27.05 
 
 		 219 aa  75.9  0.0000000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  27.75 
 
 		 215 aa  75.1  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  35.88 
 
 		 215 aa  75.1  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal  1 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  25.12 
 
 		 223 aa  75.1  0.000000000001  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  31.03 
 
 		 210 aa  73.9  0.000000000002  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  28.64 
 
 		 224 aa  74.3  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  29.06 
 
 		 209 aa  74.3  0.000000000002  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  28.57 
 
 		 220 aa  74.3  0.000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  26.98 
 
 		 209 aa  73.9  0.000000000003  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_007794  Saro_1627  two component LuxR family transcriptional regulator  27.23 
 
 		 244 aa  73.6  0.000000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0484719  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  33.33 
 
 		 224 aa  73.6  0.000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  28.7 
 
 		 213 aa  73.9  0.000000000003  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  29.17 
 
 		 219 aa  73.2  0.000000000004  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  33.54 
 
 		 212 aa  73.2  0.000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  30.88 
 
 		 212 aa  73.2  0.000000000004  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  31.86 
 
 		 216 aa  72.8  0.000000000006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  29.86 
 
 		 221 aa  72.4  0.000000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007489  RSP_4133  two component LuxR family transcriptional regulator  36.51 
 
 		 240 aa  72.4  0.000000000007  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  34.29 
 
 		 215 aa  72  0.000000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.463895 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  27.56 
 
 		 223 aa  71.6  0.00000000001  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  29.3 
 
 		 222 aa  72  0.00000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  34.35 
 
 		 215 aa  71.6  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  32.52 
 
 		 224 aa  71.6  0.00000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  30.1 
 
 		 222 aa  71.6  0.00000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  30.54 
 
 		 210 aa  71.6  0.00000000001  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  36.29 
 
 		 221 aa  71.6  0.00000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  32.19 
 
 		 251 aa  70.9  0.00000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  32.86 
 
 		 215 aa  70.9  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  29.47 
 
 		 221 aa  71.2  0.00000000002  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007510  Bcep18194_A5547  two component LuxR family transcriptional regulator  28.77 
 
 		 278 aa  70.5  0.00000000002  Burkholderia sp. 383  Bacteria  hitchhiker  0.0000595114  normal  0.307303 
 
 
-
 
NC_007651  BTH_I1094  DNA-binding response regulator  30.22 
 
 		 279 aa  70.9  0.00000000002  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000582737  n/a   
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  27.27 
 
 		 217 aa  70.9  0.00000000002  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.332036 
 
 
-
 
NC_009719  Plav_1690  two component LuxR family transcriptional regulator  33.33 
 
 		 215 aa  71.2  0.00000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.104312 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  34.85 
 
 		 218 aa  70.9  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008060  Bcen_1607  two component LuxR family transcriptional regulator  30.82 
 
 		 278 aa  70.5  0.00000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0202468  n/a   
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  26.97 
 
 		 248 aa  70.9  0.00000000002  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  30.29 
 
 		 221 aa  71.2  0.00000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008542  Bcen2424_2219  two component LuxR family transcriptional regulator  30.82 
 
 		 278 aa  70.5  0.00000000002  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00895129  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  26.91 
 
 		 221 aa  70.5  0.00000000003  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  36.03 
 
 		 223 aa  70.1  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  34.35 
 
 		 218 aa  70.1  0.00000000003  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  27.31 
 
 		 216 aa  69.7  0.00000000004  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  31.06 
 
 		 220 aa  69.7  0.00000000004  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  31.06 
 
 		 220 aa  69.7  0.00000000004  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  27.31 
 
 		 216 aa  69.7  0.00000000004  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  37.1 
 
 		 221 aa  70.1  0.00000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  36.52 
 
 		 218 aa  69.7  0.00000000004  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_009620  Smed_4816  response regulator receiver protein  32.54 
 
 		 248 aa  70.1  0.00000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.890736  normal  0.794324 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  27.31 
 
 		 216 aa  69.7  0.00000000004  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010508  Bcenmc03_2243  two component LuxR family transcriptional regulator  32.19 
 
 		 278 aa  69.7  0.00000000004  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000421268  normal  1 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  31.06 
 
 		 220 aa  69.7  0.00000000004  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  31.06 
 
 		 220 aa  69.3  0.00000000006  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  31.51 
 
 		 251 aa  69.3  0.00000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  34.62 
 
 		 214 aa  68.9  0.00000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  31.06 
 
 		 220 aa  69.3  0.00000000007  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_1309  two component LuxR family transcriptional regulator  37.4 
 
 		 206 aa  68.9  0.00000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000148999  n/a   
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  27.88 
 
 		 209 aa  68.6  0.00000000009  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal  1 
 
 
-
 
NC_009921  Franean1_3846  two component LuxR family transcriptional regulator  33.08 
 
 		 249 aa  68.9  0.00000000009  Frankia sp. EAN1pec  Bacteria  normal  0.525033  normal  0.770826 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  31.91 
 
 		 213 aa  68.6  0.00000000009  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
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