More than 300 homologs were found in PanDaTox collection
for query gene Vapar_0555 on replicon NC_012791
Organism: Variovorax paradoxus S110



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  100 
 
 		 227 aa  447  1e-125  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  46.67 
 
 		 224 aa  172  2.9999999999999996e-42  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  44.93 
 
 		 224 aa  151  5.9999999999999996e-36  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007952  Bxe_B1813  two component LuxR family transcriptional regulator  39.18 
 
 		 249 aa  150  1e-35  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.172477 
 
 
-
 
NC_010623  Bphy_5117  two component LuxR family transcriptional regulator  37.75 
 
 		 253 aa  147  9e-35  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.180541 
 
 
-
 
NC_010676  Bphyt_4850  two component transcriptional regulator, LuxR family  37.15 
 
 		 257 aa  147  1.0000000000000001e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0778424  normal  0.0399542 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  40.72 
 
 		 209 aa  146  2.0000000000000003e-34  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  38.56 
 
 		 248 aa  143  2e-33  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  40.27 
 
 		 222 aa  142  3e-33  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  42.86 
 
 		 210 aa  142  4e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  39.38 
 
 		 221 aa  139  3e-32  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  39.37 
 
 		 221 aa  139  3.9999999999999997e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  38.64 
 
 		 221 aa  138  6e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  38.05 
 
 		 220 aa  135  4e-31  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  39.09 
 
 		 221 aa  135  4e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  42.86 
 
 		 216 aa  134  9.999999999999999e-31  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  38.57 
 
 		 215 aa  133  1.9999999999999998e-30  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  39.64 
 
 		 215 aa  132  3e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  38.74 
 
 		 216 aa  132  3e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  37.73 
 
 		 220 aa  132  3e-30  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  37.73 
 
 		 220 aa  132  3.9999999999999996e-30  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  39.64 
 
 		 215 aa  132  5e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  37.73 
 
 		 220 aa  132  5e-30  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  36.16 
 
 		 238 aa  132  5e-30  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  38.18 
 
 		 220 aa  132  6e-30  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  36.89 
 
 		 220 aa  130  2.0000000000000002e-29  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  37.56 
 
 		 221 aa  130  2.0000000000000002e-29  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  37.05 
 
 		 219 aa  129  4.0000000000000003e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_011662  Tmz1t_3355  two component transcriptional regulator, LuxR family  39.17 
 
 		 208 aa  129  4.0000000000000003e-29  Thauera sp. MZ1T  Bacteria  normal  0.687232  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  40.27 
 
 		 209 aa  129  4.0000000000000003e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  35.84 
 
 		 227 aa  129  5.0000000000000004e-29  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  39.91 
 
 		 217 aa  128  6e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  40.45 
 
 		 201 aa  128  6e-29  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  39.91 
 
 		 217 aa  128  6e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  39.01 
 
 		 215 aa  126  3e-28  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  36.12 
 
 		 219 aa  125  4.0000000000000003e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  36.44 
 
 		 219 aa  125  5e-28  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  37.67 
 
 		 216 aa  125  6e-28  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  37.56 
 
 		 220 aa  124  9e-28  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  37.22 
 
 		 216 aa  124  1e-27  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  36.82 
 
 		 220 aa  124  1e-27  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  37.22 
 
 		 216 aa  124  1e-27  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  36.82 
 
 		 220 aa  124  1e-27  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  37.22 
 
 		 216 aa  124  2e-27  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  35.91 
 
 		 220 aa  122  3e-27  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  40.18 
 
 		 232 aa  122  3e-27  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  36.36 
 
 		 220 aa  122  4e-27  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  35.87 
 
 		 209 aa  122  4e-27  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  35.29 
 
 		 224 aa  122  7e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_007643  Rru_A2603  two component LuxR family transcriptional regulator  37.28 
 
 		 226 aa  121  9.999999999999999e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0876088  n/a   
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  33.93 
 
 		 218 aa  121  9.999999999999999e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  34.09 
 
 		 219 aa  120  1.9999999999999998e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  35.56 
 
 		 219 aa  120  1.9999999999999998e-26  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  36.77 
 
 		 218 aa  119  3.9999999999999996e-26  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  40 
 
 		 230 aa  118  7.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  36.65 
 
 		 216 aa  118  9e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  35.43 
 
 		 210 aa  117  9.999999999999999e-26  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  35.53 
 
 		 223 aa  115  5e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  34.98 
 
 		 210 aa  115  7.999999999999999e-25  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  32.13 
 
 		 212 aa  114  8.999999999999998e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  35.37 
 
 		 224 aa  114  8.999999999999998e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  34.7 
 
 		 241 aa  114  1.0000000000000001e-24  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  33.48 
 
 		 219 aa  114  1.0000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  35.37 
 
 		 224 aa  113  2.0000000000000002e-24  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  35.16 
 
 		 221 aa  114  2.0000000000000002e-24  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  37.06 
 
 		 209 aa  113  2.0000000000000002e-24  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  34.38 
 
 		 217 aa  113  3e-24  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  35.32 
 
 		 215 aa  112  5e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  35.32 
 
 		 251 aa  112  5e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  34.51 
 
 		 224 aa  111  9e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  34.98 
 
 		 251 aa  111  1.0000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  36.2 
 
 		 221 aa  110  1.0000000000000001e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  37.22 
 
 		 217 aa  110  1.0000000000000001e-23  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  35.62 
 
 		 221 aa  110  2.0000000000000002e-23  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  34.98 
 
 		 222 aa  110  2.0000000000000002e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_010524  Lcho_1299  two component LuxR family transcriptional regulator  34.77 
 
 		 273 aa  109  3e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0170327 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  32.3 
 
 		 219 aa  110  3e-23  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  37.44 
 
 		 221 aa  110  3e-23  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  35.91 
 
 		 221 aa  109  3e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  36.2 
 
 		 209 aa  109  4.0000000000000004e-23  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  35.43 
 
 		 223 aa  109  4.0000000000000004e-23  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  35.09 
 
 		 214 aa  109  4.0000000000000004e-23  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  35.09 
 
 		 214 aa  109  4.0000000000000004e-23  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  34.7 
 
 		 222 aa  109  4.0000000000000004e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  34.7 
 
 		 209 aa  108  5e-23  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  34.64 
 
 		 211 aa  108  5e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_1110  two component transcriptional regulator, LuxR family  39.17 
 
 		 245 aa  108  6e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.686827  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  35 
 
 		 216 aa  108  6e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  34.55 
 
 		 224 aa  107  1e-22  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  31.72 
 
 		 239 aa  107  1e-22  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  36.65 
 
 		 238 aa  107  1e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_012857  Rpic12D_3718  two component transcriptional regulator, LuxR family  36.2 
 
 		 231 aa  108  1e-22  Ralstonia pickettii 12D  Bacteria  normal  0.0262455  normal  0.571903 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  31.63 
 
 		 229 aa  107  1e-22  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  34.96 
 
 		 219 aa  106  2e-22  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  36.82 
 
 		 212 aa  107  2e-22  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  34.75 
 
 		 225 aa  107  2e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_010511  M446_2139  two component LuxR family transcriptional regulator  40.09 
 
 		 244 aa  107  2e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.0202732  normal  0.168937 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  36.53 
 
 		 221 aa  106  3e-22  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  34.36 
 
 		 213 aa  106  3e-22  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  35.78 
 
 		 218 aa  106  3e-22  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>