More than 300 homologs were found in PanDaTox collection
for query gene Acry_1738 on replicon NC_009484
Organism: Acidiphilium cryptum JF-5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009484  Acry_1738  response regulator receiver protein  100 
 
 
267 aa  533  1e-150  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0957  LuxR family transcriptional regulator  35.59 
 
 
342 aa  119  4.9999999999999996e-26  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.553991  normal  0.407109 
 
 
-
 
NC_012852  Rleg_6225  two component transcriptional regulator, LuxR family  37.33 
 
 
258 aa  119  6e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.173155 
 
 
-
 
NC_009620  Smed_4826  two component LuxR family transcriptional regulator  35.54 
 
 
267 aa  114  2.0000000000000002e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.847801  normal  0.0520322 
 
 
-
 
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  35.62 
 
 
259 aa  110  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal 
 
 
-
 
NC_011371  Rleg2_6421  two component transcriptional regulator, LuxR family  34.23 
 
 
251 aa  110  4.0000000000000004e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal 
 
 
-
 
NC_004311  BRA0415  LuxR family transcriptional regulator  34.88 
 
 
255 aa  108  1e-22  Brucella suis 1330  Bacteria  normal  0.272996  n/a   
 
 
-
 
NC_009504  BOV_A0358  LuxR family transcriptional regulator  34.88 
 
 
255 aa  108  1e-22  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2574  two component LuxR family transcriptional regulator  34.88 
 
 
253 aa  108  1e-22  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2943  two component LuxR family transcriptional regulator  33.33 
 
 
351 aa  106  4e-22  Nitrobacter hamburgensis X14  Bacteria  normal  0.692808  n/a   
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  33.49 
 
 
258 aa  106  5e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  35.94 
 
 
241 aa  102  6e-21  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  33.19 
 
 
275 aa  99  8e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal 
 
 
-
 
NC_007493  RSP_0316  LuxR family transcriptional regulator  34.1 
 
 
213 aa  92.8  6e-18  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.155222  n/a   
 
 
-
 
NC_009049  Rsph17029_1961  response regulator receiver protein  33.65 
 
 
247 aa  92.4  7e-18  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0978  two component LuxR family transcriptional regulator  32.87 
 
 
247 aa  91.3  1e-17  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.159022  normal 
 
 
-
 
NC_009428  Rsph17025_1676  two component LuxR family transcriptional regulator  30.18 
 
 
210 aa  86.3  5e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.123322  normal 
 
 
-
 
NC_009049  Rsph17029_1723  two component LuxR family transcriptional regulator  29.07 
 
 
240 aa  85.5  8e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1690  two component LuxR family transcriptional regulator  35.71 
 
 
215 aa  85.5  9e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.104312 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  30.09 
 
 
227 aa  85.1  0.000000000000001  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  37.67 
 
 
217 aa  84.7  0.000000000000001  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  34.76 
 
 
219 aa  85.1  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  34.62 
 
 
209 aa  84.7  0.000000000000001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  36.59 
 
 
220 aa  84.7  0.000000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  36.02 
 
 
221 aa  84.3  0.000000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0087  two component transcriptional regulator, LuxR  29.82 
 
 
210 aa  84.3  0.000000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.197031  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  33.02 
 
 
224 aa  84  0.000000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  32.86 
 
 
204 aa  83.6  0.000000000000003  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  33.01 
 
 
224 aa  83.2  0.000000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  35.92 
 
 
214 aa  82.4  0.000000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  31.96 
 
 
239 aa  82  0.000000000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  39.46 
 
 
209 aa  81.3  0.00000000000001  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  34.52 
 
 
201 aa  82  0.00000000000001  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  33.49 
 
 
217 aa  81.6  0.00000000000001  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3701  two component LuxR family transcriptional regulator  44.26 
 
 
253 aa  81.6  0.00000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.567008  normal  0.770716 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  39.16 
 
 
251 aa  80.9  0.00000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  39.72 
 
 
251 aa  80.5  0.00000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  33.04 
 
 
212 aa  79.3  0.00000000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  29.69 
 
 
245 aa  79  0.00000000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  38.16 
 
 
221 aa  79  0.00000000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0584  two component response regulator  34.34 
 
 
215 aa  79  0.00000000000008  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  37.25 
 
 
224 aa  78.6  0.00000000000009  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  30.66 
 
 
220 aa  78.6  0.0000000000001  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  30.66 
 
 
220 aa  78.2  0.0000000000001  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  37.5 
 
 
221 aa  77.8  0.0000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  34.86 
 
 
241 aa  77.4  0.0000000000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0133592 
 
 
-
 
NC_011369  Rleg2_0250  two component transcriptional regulator, LuxR family  29.02 
 
 
260 aa  77.8  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.664516  normal 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  36.55 
 
 
221 aa  77.4  0.0000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  38.36 
 
 
209 aa  77  0.0000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  32.23 
 
 
219 aa  77  0.0000000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  30.81 
 
 
220 aa  76.3  0.0000000000005  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  34.97 
 
 
213 aa  75.9  0.0000000000007  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  35.78 
 
 
222 aa  75.9  0.0000000000007  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  34.59 
 
 
236 aa  75.9  0.0000000000007  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  33.78 
 
 
227 aa  75.5  0.0000000000008  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  30.81 
 
 
220 aa  74.7  0.000000000001  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  31.46 
 
 
238 aa  75.1  0.000000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  31.63 
 
 
219 aa  74.7  0.000000000001  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  33.13 
 
 
219 aa  74.7  0.000000000002  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  30.81 
 
 
220 aa  74.7  0.000000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  35.15 
 
 
248 aa  74.3  0.000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  31.51 
 
 
232 aa  73.9  0.000000000002  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  33.33 
 
 
216 aa  74.7  0.000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  36.55 
 
 
213 aa  73.6  0.000000000003  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  30.81 
 
 
220 aa  73.6  0.000000000003  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_010681  Bphyt_1379  two component transcriptional regulator, LuxR family  35.71 
 
 
292 aa  73.9  0.000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0210202  hitchhiker  0.00446461 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  34.04 
 
 
209 aa  73.6  0.000000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  30.81 
 
 
220 aa  73.6  0.000000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  30.3 
 
 
220 aa  73.2  0.000000000004  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  36.24 
 
 
215 aa  73.2  0.000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  39.57 
 
 
223 aa  73.2  0.000000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  38.18 
 
 
214 aa  73.6  0.000000000004  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  31.76 
 
 
216 aa  73.2  0.000000000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  42.75 
 
 
209 aa  72.8  0.000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  32.72 
 
 
263 aa  72.8  0.000000000005  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  38.3 
 
 
209 aa  73.2  0.000000000005  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  34.29 
 
 
214 aa  73.2  0.000000000005  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  35.17 
 
 
211 aa  72.8  0.000000000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  35.46 
 
 
215 aa  72.8  0.000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  30.37 
 
 
211 aa  72.8  0.000000000006  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  31.62 
 
 
252 aa  72.8  0.000000000006  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  30.14 
 
 
220 aa  72.4  0.000000000007  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  30.99 
 
 
218 aa  72.4  0.000000000008  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  30.32 
 
 
219 aa  71.6  0.00000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  30.09 
 
 
204 aa  72  0.00000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  32.09 
 
 
210 aa  71.6  0.00000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  36.62 
 
 
215 aa  71.6  0.00000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.463895 
 
 
-
 
NC_008709  Ping_2536  two component transcriptional regulator, LuxR family protein  35.17 
 
 
216 aa  71.6  0.00000000001  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009430  Rsph17025_4184  hypothetical protein  30.58 
 
 
207 aa  72  0.00000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.400045  normal  0.380291 
 
 
-
 
NC_007951  Bxe_A3176  two component LuxR family transcriptional regulator  37.01 
 
 
292 aa  72  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.0570221  normal  0.472976 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  32.2 
 
 
220 aa  71.6  0.00000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  37.01 
 
 
224 aa  70.9  0.00000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  31.94 
 
 
225 aa  70.5  0.00000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  30.45 
 
 
243 aa  71.2  0.00000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  32.74 
 
 
221 aa  71.2  0.00000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  32.43 
 
 
209 aa  70.5  0.00000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3116  two component transcriptional regulator, LuxR family  38.67 
 
 
215 aa  70.1  0.00000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  32.7 
 
 
227 aa  70.1  0.00000000004  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0564  two component LuxR family transcriptional regulator  57.14 
 
 
197 aa  69.7  0.00000000004  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1813  two component LuxR family transcriptional regulator  32.77 
 
 
249 aa  69.7  0.00000000005  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.172477 
 
 
-
 
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