More than 300 homologs were found in PanDaTox collection
for query gene Pnuc_0564 on replicon NC_009379
Organism: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009379  Pnuc_0564  two component LuxR family transcriptional regulator  100 
 
 		 197 aa  403  1.0000000000000001e-112  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  34.95 
 
 		 252 aa  116  1.9999999999999998e-25  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  33.33 
 
 		 209 aa  102  4e-21  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  31.4 
 
 		 223 aa  101  7e-21  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  29.76 
 
 		 222 aa  100  1e-20  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  30.24 
 
 		 221 aa  100  1e-20  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  32.04 
 
 		 220 aa  100  2e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  31.4 
 
 		 223 aa  99.8  2e-20  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  31.4 
 
 		 223 aa  99.4  3e-20  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  30.92 
 
 		 223 aa  98.2  6e-20  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  28.5 
 
 		 241 aa  97.1  1e-19  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_012791  Vapar_4026  two component transcriptional regulator, LuxR family  32 
 
 		 200 aa  96.7  2e-19  Variovorax paradoxus S110  Bacteria  normal  0.105506  n/a   
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  34.76 
 
 		 217 aa  97.1  2e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  30.05 
 
 		 239 aa  96.3  2e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  34.76 
 
 		 217 aa  97.1  2e-19  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  29.03 
 
 		 229 aa  95.9  3e-19  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_0522  two component LuxR family transcriptional regulator  32.54 
 
 		 219 aa  94.7  7e-19  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  32.09 
 
 		 210 aa  94.4  9e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  32.52 
 
 		 209 aa  92.8  3e-18  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  32.41 
 
 		 219 aa  92.8  3e-18  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  32.69 
 
 		 216 aa  92  4e-18  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  30.58 
 
 		 224 aa  92  5e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  32.86 
 
 		 215 aa  91.7  6e-18  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  32 
 
 		 211 aa  91.7  7e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  29.9 
 
 		 219 aa  91.3  8e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  28.08 
 
 		 211 aa  91.3  9e-18  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  29.95 
 
 		 227 aa  91.3  9e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  28.64 
 
 		 212 aa  90.9  1e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  27.75 
 
 		 244 aa  90.9  1e-17  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.89842 
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  27.75 
 
 		 244 aa  90.9  1e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  31.46 
 
 		 219 aa  90.1  2e-17  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  27.52 
 
 		 219 aa  89.4  3e-17  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  32.54 
 
 		 217 aa  89.4  3e-17  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  33.33 
 
 		 215 aa  89  4e-17  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  30.43 
 
 		 223 aa  89  4e-17  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  28.7 
 
 		 251 aa  88.6  5e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  29.81 
 
 		 221 aa  89  5e-17  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  33.16 
 
 		 209 aa  88.6  6e-17  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  29.25 
 
 		 219 aa  87.4  1e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  31 
 
 		 209 aa  87.4  1e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  27.78 
 
 		 251 aa  87.4  1e-16  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  31.75 
 
 		 220 aa  86.7  2e-16  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  30.67 
 
 		 224 aa  86.7  2e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_2674  two component transcriptional regulator  31.46 
 
 		 228 aa  86.7  2e-16  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00219271  normal  1 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  31.75 
 
 		 220 aa  86.7  2e-16  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  30.29 
 
 		 220 aa  86.7  2e-16  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  30.29 
 
 		 220 aa  87  2e-16  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  31.75 
 
 		 220 aa  86.7  2e-16  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_3359  two component transcriptional regulator, LuxR family  29.09 
 
 		 219 aa  86.3  3e-16  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00321115  hitchhiker  0.000132937 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  32.02 
 
 		 215 aa  86.3  3e-16  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  33.01 
 
 		 214 aa  86.3  3e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  30.29 
 
 		 220 aa  86.3  3e-16  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  27.83 
 
 		 238 aa  86.3  3e-16  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_3305  LuxR family DNA-binding response regulator  32.68 
 
 		 206 aa  85.9  4e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  31.55 
 
 		 220 aa  85.9  4e-16  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_007493  RSP_2591  two component LuxR family transcriptional regulator  32.06 
 
 		 235 aa  85.5  4e-16  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.211381  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  30.81 
 
 		 220 aa  85.9  4e-16  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  27.88 
 
 		 214 aa  85.5  4e-16  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  29.13 
 
 		 224 aa  85.5  5e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  29.72 
 
 		 221 aa  85.5  5e-16  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  27.88 
 
 		 235 aa  85.5  5e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_013595  Sros_0508  response regulator receiver protein  29.82 
 
 		 212 aa  85.5  5e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  31.73 
 
 		 220 aa  85.1  6e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  31.16 
 
 		 213 aa  85.1  6e-16  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_4854  putative two component LuxR family transcriptional regulator  31.51 
 
 		 211 aa  85.1  6e-16  Cupriavidus metallidurans CH34  Bacteria  normal  0.133138  normal  0.31096 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  30.92 
 
 		 212 aa  85.1  6e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  34.15 
 
 		 216 aa  85.1  6e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  28.77 
 
 		 220 aa  84.7  7e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_4040  two component LuxR family transcriptional regulator  30.05 
 
 		 216 aa  84.7  7e-16  Pseudomonas mendocina ymp  Bacteria  normal  0.56786  normal  1 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  27.52 
 
 		 217 aa  84.7  7e-16  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_1159  two component LuxR family transcriptional regulator  29.41 
 
 		 209 aa  84.7  8e-16  Sphingomonas wittichii RW1  Bacteria  normal  0.942847  normal  0.660482 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  32.02 
 
 		 215 aa  84.3  9e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  31.88 
 
 		 213 aa  84  0.000000000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  31.88 
 
 		 213 aa  84  0.000000000000001  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  29.72 
 
 		 221 aa  84.3  0.000000000000001  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  29.72 
 
 		 221 aa  84  0.000000000000001  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  29.58 
 
 		 210 aa  84.3  0.000000000000001  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  30.62 
 
 		 236 aa  84  0.000000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  30.43 
 
 		 218 aa  84  0.000000000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_0655  two component LuxR family transcriptional regulator  31.16 
 
 		 194 aa  83.2  0.000000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  30 
 
 		 221 aa  83.6  0.000000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  28.77 
 
 		 221 aa  83.2  0.000000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  29.58 
 
 		 210 aa  83.6  0.000000000000002  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  29.25 
 
 		 221 aa  83.2  0.000000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014212  Mesil_0065  two component transcriptional regulator, LuxR family  28.02 
 
 		 204 aa  83.2  0.000000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  27.23 
 
 		 213 aa  82.8  0.000000000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_009049  Rsph17029_1249  two component LuxR family transcriptional regulator  31.58 
 
 		 235 aa  82.8  0.000000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  31.25 
 
 		 216 aa  82  0.000000000000005  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  28.02 
 
 		 219 aa  82  0.000000000000005  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  25.81 
 
 		 221 aa  82  0.000000000000005  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  31.25 
 
 		 216 aa  82  0.000000000000005  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  29.13 
 
 		 218 aa  82  0.000000000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  31.25 
 
 		 216 aa  82  0.000000000000005  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  27.27 
 
 		 221 aa  82  0.000000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  28.84 
 
 		 219 aa  81.6  0.000000000000007  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_007493  RSP_2882  two component LuxR family transcriptional regulator  30.99 
 
 		 226 aa  81.3  0.000000000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.533901  n/a   
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  28.85 
 
 		 215 aa  81.3  0.000000000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.463895 
 
 
-
 
NC_007948  Bpro_1000  two component LuxR family transcriptional regulator  35.62 
 
 		 177 aa  80.9  0.00000000000001  Polaromonas sp. JS666  Bacteria  normal  1  hitchhiker  0.00026015 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  27.7 
 
 		 218 aa  80.9  0.00000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  30.48 
 
 		 216 aa  80.5  0.00000000000001  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>