More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4854 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007974  Rmet_4854  putative two component LuxR family transcriptional regulator  100 
 
 		 211 aa  427  1e-119  Cupriavidus metallidurans CH34  Bacteria  normal  0.133138  normal  0.31096 
 
 
-
 
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  39.9 
 
 		 219 aa  130  2.0000000000000002e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0920509 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  36.59 
 
 		 244 aa  124  7e-28  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.89842 
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  36.59 
 
 		 244 aa  124  7e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  36.2 
 
 		 224 aa  123  2e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  37.68 
 
 		 224 aa  122  5e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  35.48 
 
 		 241 aa  122  6e-27  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  40 
 
 		 221 aa  120  9.999999999999999e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010510  Mrad2831_5839  two component LuxR family transcriptional regulator  37.02 
 
 		 198 aa  120  1.9999999999999998e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.242407  hitchhiker  0.00194364 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  36.07 
 
 		 215 aa  119  3e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  35.78 
 
 		 213 aa  119  3.9999999999999996e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  33.01 
 
 		 220 aa  117  9.999999999999999e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  35.78 
 
 		 223 aa  116  1.9999999999999998e-25  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  36.54 
 
 		 212 aa  115  3e-25  Caulobacter sp. K31  Bacteria  normal  1  normal  0.881689 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  35.58 
 
 		 224 aa  116  3e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  35.78 
 
 		 223 aa  115  3e-25  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  33.97 
 
 		 212 aa  116  3e-25  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  35.78 
 
 		 223 aa  115  3.9999999999999997e-25  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  36.11 
 
 		 227 aa  114  6.9999999999999995e-25  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  38.28 
 
 		 220 aa  114  8.999999999999998e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  35.45 
 
 		 223 aa  114  8.999999999999998e-25  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  36.19 
 
 		 223 aa  114  1.0000000000000001e-24  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  36.95 
 
 		 210 aa  114  1.0000000000000001e-24  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  33.17 
 
 		 219 aa  114  1.0000000000000001e-24  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  38.1 
 
 		 227 aa  113  2.0000000000000002e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  38.1 
 
 		 221 aa  113  2.0000000000000002e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  35.59 
 
 		 221 aa  113  2.0000000000000002e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  35.89 
 
 		 215 aa  112  3e-24  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  34.3 
 
 		 212 aa  113  3e-24  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  35.68 
 
 		 224 aa  112  3e-24  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  34.33 
 
 		 220 aa  112  3e-24  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  34.31 
 
 		 220 aa  112  4.0000000000000004e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  33.17 
 
 		 220 aa  112  4.0000000000000004e-24  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  33.49 
 
 		 219 aa  112  4.0000000000000004e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  31.92 
 
 		 217 aa  112  5e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  35.15 
 
 		 220 aa  112  6e-24  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  35.15 
 
 		 220 aa  111  6e-24  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  33.95 
 
 		 221 aa  111  6e-24  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  35.15 
 
 		 220 aa  111  6e-24  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_006348  BMA1736  DNA-binding response regulator NarL  31.98 
 
 		 233 aa  111  8.000000000000001e-24  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007434  BURPS1710b_2764  DNA-binding response regulator NarL  31.98 
 
 		 233 aa  111  8.000000000000001e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  0.922757  n/a   
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  36.71 
 
 		 210 aa  111  8.000000000000001e-24  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2246  DNA-binding response regulator NarL  31.98 
 
 		 233 aa  111  8.000000000000001e-24  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008836  BMA10229_A3072  DNA-binding response regulator NarL  31.98 
 
 		 233 aa  111  8.000000000000001e-24  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_2630  nitrate/nitrite response regulator protein NarL  31.98 
 
 		 233 aa  111  8.000000000000001e-24  Burkholderia pseudomallei 668  Bacteria  normal  0.14617  n/a   
 
 
-
 
NC_009076  BURPS1106A_2686  nitrate/nitrite response regulator protein NarL  31.98 
 
 		 233 aa  111  8.000000000000001e-24  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_1519  DNA-binding response regulator NarL  31.98 
 
 		 233 aa  111  8.000000000000001e-24  Burkholderia mallei NCTC 10247  Bacteria  normal  0.281442  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  36.45 
 
 		 210 aa  110  1.0000000000000001e-23  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  35.82 
 
 		 209 aa  110  1.0000000000000001e-23  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  34.33 
 
 		 220 aa  110  1.0000000000000001e-23  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  32.38 
 
 		 209 aa  110  1.0000000000000001e-23  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  32.73 
 
 		 212 aa  110  1.0000000000000001e-23  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  33.98 
 
 		 251 aa  111  1.0000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  32.68 
 
 		 220 aa  110  1.0000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  35.47 
 
 		 224 aa  111  1.0000000000000001e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  32.55 
 
 		 218 aa  110  2.0000000000000002e-23  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  34.88 
 
 		 226 aa  109  2.0000000000000002e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  32.2 
 
 		 219 aa  110  2.0000000000000002e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_013093  Amir_4433  two component transcriptional regulator, LuxR family  33.18 
 
 		 215 aa  110  2.0000000000000002e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  35.29 
 
 		 252 aa  110  2.0000000000000002e-23  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  34.43 
 
 		 226 aa  110  2.0000000000000002e-23  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  34.93 
 
 		 238 aa  110  2.0000000000000002e-23  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  37.44 
 
 		 227 aa  109  2.0000000000000002e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  32.55 
 
 		 218 aa  110  2.0000000000000002e-23  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  33 
 
 		 211 aa  110  2.0000000000000002e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  36.02 
 
 		 230 aa  109  3e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  36.41 
 
 		 238 aa  109  3e-23  Frankia sp. CcI3  Bacteria  normal  1  normal  0.135118 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  37.09 
 
 		 225 aa  109  3e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_004578  PSPTO_0897  DNA-binding response regulator, LuxR family  35.57 
 
 		 207 aa  108  5e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  33.5 
 
 		 220 aa  108  5e-23  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  36.57 
 
 		 226 aa  108  5e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  35.68 
 
 		 210 aa  108  6e-23  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  36.1 
 
 		 215 aa  108  6e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  34.42 
 
 		 225 aa  108  8.000000000000001e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  33.02 
 
 		 221 aa  108  9.000000000000001e-23  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  36.62 
 
 		 224 aa  107  9.000000000000001e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  35.96 
 
 		 222 aa  107  1e-22  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  39.11 
 
 		 216 aa  107  1e-22  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_007651  BTH_I1849  DNA-binding response regulator NarL  32.43 
 
 		 233 aa  107  1e-22  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  33.01 
 
 		 251 aa  107  1e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  31.05 
 
 		 222 aa  106  2e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  35.96 
 
 		 218 aa  106  2e-22  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  36.62 
 
 		 224 aa  107  2e-22  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_014212  Mesil_2848  two component transcriptional regulator, LuxR family  33.82 
 
 		 212 aa  107  2e-22  Meiothermus silvanus DSM 9946  Bacteria  normal  0.857037  normal  0.944506 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  34.72 
 
 		 250 aa  106  2e-22  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.631776 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  33.81 
 
 		 215 aa  106  3e-22  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  32.68 
 
 		 219 aa  105  4e-22  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  31.86 
 
 		 215 aa  105  5e-22  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  33.33 
 
 		 217 aa  105  6e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  33.33 
 
 		 217 aa  105  6e-22  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_4704  DNA-binding response regulator CorR  38.46 
 
 		 199 aa  104  7e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  31.71 
 
 		 219 aa  105  7e-22  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  33.33 
 
 		 211 aa  105  7e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.84 
 
 		 230 aa  104  8e-22  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  35.65 
 
 		 218 aa  104  9e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_010468  EcolC_1457  transcriptional regulator NarP  35.24 
 
 		 215 aa  104  1e-21  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  0.956805 
 
 
-
 
NC_012892  B21_02079  hypothetical protein  35.24 
 
 		 215 aa  104  1e-21  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_010658  SbBS512_E0748  transcriptional regulator NarP  35.24 
 
 		 215 aa  104  1e-21  Shigella boydii CDC 3083-94  Bacteria  normal  0.251733  n/a   
 
 
-
 
NC_010498  EcSMS35_2341  transcriptional regulator NarP  35.24 
 
 		 215 aa  104  1e-21  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.277554 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  34.3 
 
 		 213 aa  103  1e-21  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>