Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3283 |
Symbol | |
ID | 4253850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3917918 |
End bp | 3918589 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638119922 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_735407 |
Protein GI | 113971614 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.335218 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTCAGA TAAAAGTGGC AATTGCTGAT GATCATCCAT TATTTCGTAC AGCCTTAACG CAAGCTGTTC TCAAGAATGT GAATACGGCG GATGTATTAG AAGCAGAAAA CTTTCAAGAA TTAATTACGC TCGTTGAGAA TAATCCTGAT ATTGAACTGA TCTTTCTCGA TTTACATATG CCCGGCAATG AGGGCTTTAC TGGCTTAACT CTACTACAGA ATCATTTTCC CGATATCGCG GTGATCATGG TGTCCTCCGA TGACCAGCCC GAAATTATTC GTAAAGCCAT TAACTTTGGC GCCAGTGCTT TTATCCCCAA ATCTGCCAGC TTAACCCAGA TCTCCACCGC CATTGCCACT GTGCTCGAAG GGGAAGTCTG GCTACCGGAA CACACAGATA TCAACGTCGA TCAGCAAACC GCTGCCGAGC ATCAACGTTT AGCGAAGCAA CTGGCGCAAT TAACCCCACA GCAGTACACA GTACTGGCCA GCATTGCCAA TGGACGCTTA AACAAGCAGA TCGCCTATGA TCTTGATATT AAAGAGACCA CGGTTAAGAA ACACGTATCG GCGATACTGG TTAAACTCGA AGTCTACAAC CGCACTCAGG CAGGCTTAGT CTTCCAACAG TTGATGATAA CCAGCAACGA TAAACCGCCG ATCAACGCCT AA
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Protein sequence | MSQIKVAIAD DHPLFRTALT QAVLKNVNTA DVLEAENFQE LITLVENNPD IELIFLDLHM PGNEGFTGLT LLQNHFPDIA VIMVSSDDQP EIIRKAINFG ASAFIPKSAS LTQISTAIAT VLEGEVWLPE HTDINVDQQT AAEHQRLAKQ LAQLTPQQYT VLASIANGRL NKQIAYDLDI KETTVKKHVS AILVKLEVYN RTQAGLVFQQ LMITSNDKPP INA
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