| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1981 |
|---|
| Symbol | |
|---|
| ID | 4172116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2407827 |
|---|
| End bp | 2408468 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638054989 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_661553 |
|---|
| Protein GI | 109898298 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.607794 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCTA AAGCCATCGT TGCTGACGAC CATCCCTTGT TTCGTAGCGC CATGAAACAG
GCCATTCAAG GTGTATTGGG GAACGATATT CTTGAGTCTG CTTCCTATCA ACAAACTATC
GACTTATTAA AGCTACACAG TGACGTAGAG CTGATTTTTT TGGATTTGAA CATGCCGGGC
AATGACGGTC TAACAGGCTT GACTATGATC CGAAGTCATT TCCCAGATGT GTTGGTGGCG
ATTGTATCCG GTGATGAAAG CCCGAGTATG ATCCGAAAAG CCATGGATTT TGGCGCCTGT
GGGTATATCC CTAAATCAAC ACCGTTACCG GTAATAGCAG ATGCTGTGCG TGAGTTGTTA
GAAGGCGAGC AATGGTTACC TAATGAATTA GTAGAGCAGG TTCAAAAAAT AGAAGACAGC
CAAGAACAGG CTTTCGCGGG CAAACTTGCT CAATTGACTC CTCATCAACT AAAAGTCTTA
CAGCTTATGG CTGATGGCCT TTTGAACAAG CAAATCGCCT ATGAATTAGG TGTCAGTGAA
TCGACTATTA AACAGCATGT GTCTGCGGTG TTGCATAAGC TTGGCTTTAA TAACCGTACC
CAAGCAGGCG TGCTATTCAA ACAAATGCTA CAGGTCGAAT AA
|
|---|
| Protein sequence | MHAKAIVADD HPLFRSAMKQ AIQGVLGNDI LESASYQQTI DLLKLHSDVE LIFLDLNMPG
NDGLTGLTMI RSHFPDVLVA IVSGDESPSM IRKAMDFGAC GYIPKSTPLP VIADAVRELL
EGEQWLPNEL VEQVQKIEDS QEQAFAGKLA QLTPHQLKVL QLMADGLLNK QIAYELGVSE
STIKQHVSAV LHKLGFNNRT QAGVLFKQML QVE
|
|---|
| |