More than 300 homologs were found in PanDaTox collection
for query gene Lcho_1574 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  100 
 
 
219 aa  427  1e-119  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  37.56 
 
 
220 aa  145  5e-34  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  37.96 
 
 
224 aa  142  5e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  37.74 
 
 
221 aa  141  6e-33  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  37.56 
 
 
222 aa  141  6e-33  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  40.09 
 
 
221 aa  141  7e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  40.09 
 
 
221 aa  140  9.999999999999999e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  40 
 
 
221 aa  140  1.9999999999999998e-32  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  37.67 
 
 
227 aa  140  1.9999999999999998e-32  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  39.56 
 
 
224 aa  139  3e-32  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  38.32 
 
 
220 aa  139  3e-32  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  38.97 
 
 
220 aa  139  3e-32  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  37.74 
 
 
221 aa  139  3e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  38.32 
 
 
220 aa  139  3.9999999999999997e-32  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  39.07 
 
 
220 aa  138  4.999999999999999e-32  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  39.07 
 
 
220 aa  138  4.999999999999999e-32  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  34.25 
 
 
227 aa  138  6e-32  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  37.38 
 
 
220 aa  138  7e-32  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  38.32 
 
 
220 aa  137  1e-31  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  35.81 
 
 
212 aa  137  1e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  37.04 
 
 
220 aa  136  2e-31  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  38.25 
 
 
220 aa  137  2e-31  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  39.81 
 
 
238 aa  137  2e-31  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  37.27 
 
 
219 aa  136  3.0000000000000003e-31  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  36.32 
 
 
220 aa  135  3.0000000000000003e-31  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  37.44 
 
 
216 aa  135  4e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.192356 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  37.38 
 
 
219 aa  134  8e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  33.93 
 
 
223 aa  134  9e-31  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.211294 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  33.81 
 
 
218 aa  134  9.999999999999999e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  37.86 
 
 
218 aa  133  1.9999999999999998e-30  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  37.62 
 
 
221 aa  133  1.9999999999999998e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  37.67 
 
 
219 aa  134  1.9999999999999998e-30  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  36.24 
 
 
252 aa  132  3e-30  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  37.44 
 
 
215 aa  132  3e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  37.44 
 
 
221 aa  133  3e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  34.29 
 
 
223 aa  132  3.9999999999999996e-30  Shewanella sp. MR-7  Bacteria  normal  normal  0.358413 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  34.76 
 
 
223 aa  132  3.9999999999999996e-30  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  35.16 
 
 
219 aa  132  5e-30  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  37.56 
 
 
215 aa  132  5e-30  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  36.95 
 
 
215 aa  132  6e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  36.89 
 
 
216 aa  131  9e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  40.09 
 
 
218 aa  130  1.0000000000000001e-29  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  34.29 
 
 
223 aa  130  1.0000000000000001e-29  Shewanella sp. MR-4  Bacteria  normal  normal  0.335218 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  36.79 
 
 
219 aa  130  2.0000000000000002e-29  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  37.93 
 
 
248 aa  130  2.0000000000000002e-29  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  38.6 
 
 
216 aa  130  2.0000000000000002e-29  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  37.21 
 
 
232 aa  130  2.0000000000000002e-29  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  36.59 
 
 
214 aa  129  3e-29  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  36.59 
 
 
214 aa  129  3e-29  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  35.89 
 
 
210 aa  129  4.0000000000000003e-29  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  35.91 
 
 
251 aa  129  4.0000000000000003e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  33.49 
 
 
219 aa  128  5.0000000000000004e-29  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  35.51 
 
 
241 aa  129  5.0000000000000004e-29  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0133592 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  38.39 
 
 
221 aa  128  5.0000000000000004e-29  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  33.02 
 
 
211 aa  128  7.000000000000001e-29  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  37.56 
 
 
229 aa  127  9.000000000000001e-29  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.190475 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  37.25 
 
 
216 aa  127  1.0000000000000001e-28  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00000000317123 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  35.51 
 
 
224 aa  126  2.0000000000000002e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  36.02 
 
 
218 aa  127  2.0000000000000002e-28  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  36.45 
 
 
216 aa  126  3e-28  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0994806 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  35.1 
 
 
210 aa  126  3e-28  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  35 
 
 
251 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  36.92 
 
 
214 aa  126  3e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  36.45 
 
 
216 aa  126  3e-28  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  36.45 
 
 
216 aa  126  3e-28  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000136895 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  33.82 
 
 
223 aa  125  6e-28  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  36.87 
 
 
219 aa  125  6e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0920509 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  35.85 
 
 
215 aa  125  6e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  37.09 
 
 
221 aa  124  1e-27  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  34.72 
 
 
209 aa  124  1e-27  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  36.79 
 
 
213 aa  124  1e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  37.38 
 
 
214 aa  124  1e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  38.1 
 
 
225 aa  123  2e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  36.19 
 
 
223 aa  123  2e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  37.14 
 
 
224 aa  122  3e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  37.14 
 
 
224 aa  122  3e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0588074 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  36.32 
 
 
244 aa  122  4e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.89842 
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  35.65 
 
 
216 aa  122  4e-27  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  36.62 
 
 
221 aa  122  4e-27  Pseudomonas putida GB-1  Bacteria  normal  normal  0.892266 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  35.29 
 
 
212 aa  122  4e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  36.32 
 
 
244 aa  122  4e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  33.18 
 
 
210 aa  122  5e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  36.62 
 
 
221 aa  122  5e-27  Pseudomonas putida F1  Bacteria  normal  0.548338  normal 
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  33.64 
 
 
230 aa  121  6e-27  Sinorhizobium medicae WSM419  Bacteria  normal  decreased coverage  0.00554548 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  36.27 
 
 
215 aa  121  8e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2130  two component transcriptional regulator, LuxR family  32.31 
 
 
239 aa  121  9.999999999999999e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  35.98 
 
 
213 aa  120  1.9999999999999998e-26  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  34.43 
 
 
224 aa  120  1.9999999999999998e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  34.74 
 
 
209 aa  120  1.9999999999999998e-26  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  34.09 
 
 
227 aa  120  1.9999999999999998e-26  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  35.51 
 
 
213 aa  119  3e-26  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  35.02 
 
 
223 aa  119  3e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  35.44 
 
 
217 aa  119  3.9999999999999996e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  34.43 
 
 
209 aa  119  3.9999999999999996e-26  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  35.44 
 
 
217 aa  119  3.9999999999999996e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  35.98 
 
 
212 aa  119  4.9999999999999996e-26  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  34.58 
 
 
219 aa  118  7.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  35.75 
 
 
216 aa  118  9e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  33.02 
 
 
220 aa  117  9.999999999999999e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  38.03 
 
 
231 aa  117  1.9999999999999998e-25  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
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