Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2721 |
Symbol | |
ID | 6117020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3331730 |
End bp | 3332389 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641634252 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001761092 |
Protein GI | 170727066 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.001499 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCTAG AAAATTTAAA TATAATCATC GCAGATGATC ACCCGTTATT TCGCAATGCA CTTCGTCAGG CGCTGAGCGG CCCATTTGCA GATACTCATT GGTTTGAGGC TGATAGTGCA GAAGCGCTTC AAACTCTGCT TGAAAAATCT GATGTTGAAT ACGATCTTGT CTTACTGGAT CTTCAGATGC CAGGCTCACA CGGCTACTCA ACATTAATTC ACCTACGCAC CCACTACCCG GAGCTGCCTG TTGTCGTCAT TTCGGCCCAC GAAGACAACA TCACCATAAG CCGAGCGGTA CACTACGGCA GTGCTGGTTT TATTCCTAAA TCTTCATCCA TGGACTCTCT TGCTGAAGCC TTAACCTCTG TACTCTATGG AGATATTTGG TTACCACAAG ATGTAGAGCT ACAAGACATT GAGGAGGATG CGACGGCGCT GATAGCCAGT AAGTTATCGG ATCTCACTCC ACAGCAATAC AAGGTGCTGC AGATGTTTGC CGAAGGACTG CTTAATAAAC AGATCGCTTA TGACTTAGGT GTGTCAGAAG CCACCATCAA GGCTCATGCC ACCGCAATAT TTCGTAAACT CGGTGTACGA AATCGAACTC AGGCCGTGAT ATCACTGCAA CAGCTTGAGA TGGAAAAAGT CGAACTGTAA
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Protein sequence | MKLENLNIII ADDHPLFRNA LRQALSGPFA DTHWFEADSA EALQTLLEKS DVEYDLVLLD LQMPGSHGYS TLIHLRTHYP ELPVVVISAH EDNITISRAV HYGSAGFIPK SSSMDSLAEA LTSVLYGDIW LPQDVELQDI EEDATALIAS KLSDLTPQQY KVLQMFAEGL LNKQIAYDLG VSEATIKAHA TAIFRKLGVR NRTQAVISLQ QLEMEKVEL
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