More than 300 homologs were found in PanDaTox collection
for query gene Pnap_0105 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  100 
 
 		 219 aa  441  1e-123  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0920509 
 
 
-
 
NC_010510  Mrad2831_5839  two component LuxR family transcriptional regulator  44.39 
 
 		 198 aa  144  1e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.242407  hitchhiker  0.00194364 
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  44.02 
 
 		 224 aa  144  1e-33  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_004578  PSPTO_4704  DNA-binding response regulator CorR  41.47 
 
 		 199 aa  135  7.000000000000001e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_4854  putative two component LuxR family transcriptional regulator  39.9 
 
 		 211 aa  130  2.0000000000000002e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.133138  normal  0.31096 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  36.87 
 
 		 219 aa  125  6e-28  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  36.7 
 
 		 215 aa  122  3e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  37.2 
 
 		 221 aa  122  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  34.86 
 
 		 220 aa  122  3e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  37.62 
 
 		 224 aa  120  9.999999999999999e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  38.57 
 
 		 215 aa  121  9.999999999999999e-27  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  37.68 
 
 		 221 aa  120  1.9999999999999998e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  35.71 
 
 		 216 aa  119  3e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  35.05 
 
 		 213 aa  119  3e-26  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  37.38 
 
 		 216 aa  119  3.9999999999999996e-26  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  35.62 
 
 		 238 aa  118  4.9999999999999996e-26  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  34.91 
 
 		 215 aa  117  9.999999999999999e-26  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  34.96 
 
 		 242 aa  117  9.999999999999999e-26  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  33.03 
 
 		 211 aa  117  9.999999999999999e-26  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  35.35 
 
 		 209 aa  116  3e-25  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  34.13 
 
 		 213 aa  115  5e-25  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  36.89 
 
 		 216 aa  115  6e-25  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  36.89 
 
 		 216 aa  115  6e-25  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  37.5 
 
 		 227 aa  115  6e-25  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  34.95 
 
 		 209 aa  114  7.999999999999999e-25  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  36.59 
 
 		 216 aa  114  1.0000000000000001e-24  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  36.54 
 
 		 251 aa  114  1.0000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  35.55 
 
 		 224 aa  114  1.0000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  35.21 
 
 		 217 aa  114  1.0000000000000001e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  35.21 
 
 		 217 aa  114  1.0000000000000001e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  34.25 
 
 		 219 aa  114  1.0000000000000001e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  37.2 
 
 		 215 aa  113  2.0000000000000002e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  37.14 
 
 		 214 aa  113  2.0000000000000002e-24  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  37.14 
 
 		 214 aa  113  2.0000000000000002e-24  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  35.38 
 
 		 211 aa  113  2.0000000000000002e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  35.38 
 
 		 231 aa  113  2.0000000000000002e-24  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  35.07 
 
 		 210 aa  112  3e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  36.36 
 
 		 215 aa  113  3e-24  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  36.27 
 
 		 210 aa  112  3e-24  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  34.29 
 
 		 220 aa  112  5e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  37.84 
 
 		 224 aa  112  5e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  36.02 
 
 		 222 aa  112  6e-24  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  33.01 
 
 		 214 aa  112  6e-24  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  34.25 
 
 		 236 aa  110  1.0000000000000001e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  37.2 
 
 		 215 aa  111  1.0000000000000001e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008010  Dgeo_2846  two component LuxR family transcriptional regulator  36.32 
 
 		 209 aa  110  1.0000000000000001e-23  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  33.64 
 
 		 220 aa  110  2.0000000000000002e-23  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  35.58 
 
 		 251 aa  110  2.0000000000000002e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  31.05 
 
 		 237 aa  110  2.0000000000000002e-23  Frankia sp. CcI3  Bacteria  normal  0.272345  normal  1 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  32.87 
 
 		 220 aa  110  2.0000000000000002e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  32.23 
 
 		 227 aa  110  2.0000000000000002e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  31.51 
 
 		 237 aa  110  2.0000000000000002e-23  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  33.18 
 
 		 220 aa  109  3e-23  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  34.74 
 
 		 216 aa  109  3e-23  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  31.02 
 
 		 222 aa  109  3e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  33.17 
 
 		 213 aa  109  3e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_007952  Bxe_B2471  two component LuxR family transcriptional regulator  36.19 
 
 		 220 aa  109  3e-23  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.55611 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  34.76 
 
 		 210 aa  109  3e-23  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  35.38 
 
 		 212 aa  109  3e-23  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  33.49 
 
 		 213 aa  109  3e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  32.87 
 
 		 220 aa  109  3e-23  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  33.18 
 
 		 220 aa  109  3e-23  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  34.13 
 
 		 220 aa  109  4.0000000000000004e-23  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  36.7 
 
 		 216 aa  109  4.0000000000000004e-23  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  34.15 
 
 		 218 aa  108  5e-23  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  34.88 
 
 		 221 aa  108  6e-23  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  32.86 
 
 		 217 aa  108  6e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  35.24 
 
 		 220 aa  108  6e-23  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  31.63 
 
 		 226 aa  108  7.000000000000001e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_1943  two component LuxR family transcriptional regulator  32.54 
 
 		 214 aa  108  7.000000000000001e-23  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  32.43 
 
 		 221 aa  108  8.000000000000001e-23  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  32.7 
 
 		 211 aa  108  8.000000000000001e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  36.32 
 
 		 209 aa  108  8.000000000000001e-23  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  33.49 
 
 		 218 aa  108  9.000000000000001e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  32.08 
 
 		 223 aa  108  9.000000000000001e-23  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  34.22 
 
 		 253 aa  107  1e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_014158  Tpau_2414  two component transcriptional regulator, LuxR family  37.32 
 
 		 215 aa  107  1e-22  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  37.14 
 
 		 224 aa  107  1e-22  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  33.17 
 
 		 208 aa  107  1e-22  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.0637899 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  32.08 
 
 		 223 aa  107  1e-22  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  33.65 
 
 		 220 aa  107  1e-22  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  34.6 
 
 		 213 aa  107  1e-22  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  34.91 
 
 		 215 aa  106  2e-22  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.132796 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  36.67 
 
 		 252 aa  107  2e-22  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  33.33 
 
 		 219 aa  107  2e-22  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  32.08 
 
 		 223 aa  106  2e-22  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  34.3 
 
 		 217 aa  107  2e-22  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  31.6 
 
 		 223 aa  107  2e-22  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  34.12 
 
 		 220 aa  107  2e-22  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009832  Spro_3490  two component LuxR family transcriptional regulator  32.35 
 
 		 210 aa  106  3e-22  Serratia proteamaculans 568  Bacteria  normal  0.0559776  normal  1 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  30.95 
 
 		 216 aa  106  3e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  34.68 
 
 		 250 aa  106  3e-22  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.631776 
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  33.79 
 
 		 215 aa  106  3e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  32.06 
 
 		 216 aa  106  3e-22  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  33.33 
 
 		 219 aa  105  4e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  31.8 
 
 		 219 aa  106  4e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  36.7 
 
 		 224 aa  105  4e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  38.92 
 
 		 212 aa  105  4e-22  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  0.265772 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  35.5 
 
 		 218 aa  105  5e-22  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  33.18 
 
 		 236 aa  105  5e-22  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal  1 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>