| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0105 |
|---|
| Symbol | |
|---|
| ID | 4688528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 112533 |
|---|
| End bp | 113192 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639833098 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_980351 |
|---|
| Protein GI | 121603022 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0920509 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAATT CGTTCATTGA GCCGCCCACG GTTTTGCTGG TGGACGATCA CACGCTCTTT
CGCGAAGGCA TGCGCCTCAT GCTCGGCAGC AGCCCGCTGG TGCATGCCCA CATCCTGGAT
GCCGGCAACC TGCCTGACGC CCTGGCGCTG CAGCAGTCGG TGGATCTGGT GCTGCTCGAC
ATCGGCCTGC CGGGAATCGG GGGACTGGAA GGTCTGCTAA GCGTCAGGCA GCGATGGCCG
GACGCCGTCA TCGTGATGCT GTCGGCCCAC GACAGGCCCG AGCTGGTGCG CGAAGCCCTG
AGCAAGGGCG CTTGCGGTTT TGTTTCCAAG ACCGCCCAGC CGGTGCAGAT TTGCCAGGAA
GTGCGGCGCT GGCTGTATCA GCAGCGCGGC CCCGAGCCGC AGCCGCAGGC TTTGCCCGGC
GAGGCTGCGG CCGGCGCAAT TCCGGGAGGC GACGAGAGCC TGACGCCGCG CCAGTACGAG
GTTCTCAAGC TGCTGGCGCA AGGGCTGAGC AACAAGGCGA TTGCTTTCAA GCTGCACCTG
AGCGAGCACA CCATTCGCAA CCATGTGGTC GCCATCCTGA GGCACTTCAA TGCGCTAACC
CGCACCGAGG CCGTGATGGC TTCGCAGCGT CTCGGACTTC TTCCCGCAAC CCTGATTTAA
|
|---|
| Protein sequence | MPNSFIEPPT VLLVDDHTLF REGMRLMLGS SPLVHAHILD AGNLPDALAL QQSVDLVLLD
IGLPGIGGLE GLLSVRQRWP DAVIVMLSAH DRPELVREAL SKGACGFVSK TAQPVQICQE
VRRWLYQQRG PEPQPQALPG EAAAGAIPGG DESLTPRQYE VLKLLAQGLS NKAIAFKLHL
SEHTIRNHVV AILRHFNALT RTEAVMASQR LGLLPATLI
|
|---|
| |