| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4028 |
|---|
| Symbol | |
|---|
| ID | 4175817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4851513 |
|---|
| End bp | 4852151 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638057064 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_663581 |
|---|
| Protein GI | 109900326 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGT TTTTAATTGC AGATGATCAT CCGCTATTTC GCGAAGCTTT AGTGGGTGCA
CTAAGTCCAC TGTTTGAAGA TATTGAGATT TTGCAATCCG ACTCGCTCGA CTCTACATTA
ATGACGCTCC ATGAAAACCC AGATATCGAT TTAATATTAC TCGATCTGCA CATGCCTGGA
TGTGAGAATT TCTATGGTTT AATTCGAGTC ACTCAGGATT ATCCTGAAAT TCCTGTCGCA
GTAGTCTCGG CTAGTGACTC TATTGAAGTT GTTTCGTACG TGATGAGCTT CGGCGCAAAA
GGTTTTGTAC CTAAGTCCAG CCCTACTTTG ATGATTGCTG ATGCCTTGAA AACAATCATG
AGCGGTGAAA TTTGGTTAAC TGAAGAGTTA AAAGCACAGA TTGCCCAAAT TGACGGTGAA
GAACTCAACT TAGCGCAACG AATTGCAGAA TTAACGCCTA AGCAATTTCA GGTGTTAAAG
CTAATCCATG ATGGTTTATT AAATAAACAA ATTGCTCACG AATTAAATGT CACTGAAGCG
ACCGTTAAAG CGCATATCAG TGCAGTATTT AGAAAACTAG AAGTTAATAC TCGAACTCAA
GCAGTATTGC TGCTTAAAAA GTTAAATTTA GAAGATTAG
|
|---|
| Protein sequence | MAKFLIADDH PLFREALVGA LSPLFEDIEI LQSDSLDSTL MTLHENPDID LILLDLHMPG
CENFYGLIRV TQDYPEIPVA VVSASDSIEV VSYVMSFGAK GFVPKSSPTL MIADALKTIM
SGEIWLTEEL KAQIAQIDGE ELNLAQRIAE LTPKQFQVLK LIHDGLLNKQ IAHELNVTEA
TVKAHISAVF RKLEVNTRTQ AVLLLKKLNL ED
|
|---|
| |