| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3170 |
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| Symbol | |
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| ID | 4280072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3795996 |
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| End bp | 3796679 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135988 |
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| Product | two component transcriptional regulator, LuxR family protein |
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| Protein accession | YP_751845 |
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| Protein GI | 114564331 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATGTCTC AAATTAAAGT GGCCATTGCA GATGACCATC CACTATTTCG TGCCGCGTTA
ACCCAAGCCG TGCAAAAAAG TGTCAATAAT GCACAAGTGC TAGAGGCGGA AAACTTTCAA
GAGTTAATTG CGATAGTGGA GCAGCACCCA GATATTGAGC TTATCTTTAT TGATTTGCAT
ATGCCGGGAA ACGATGGCTT TACTGGGCTG ACGTTATTGC AAAATCATTT CCCCGACATT
GTGGTTATCA TGGTGTCATC TGACGATCAG CCGGAGATTA TCCGCAAGGC GATCAATTTT
GGCGCCAGTG CTTTTATTCC AAAATCAGCC AATTTAACCC AAATATCAAC GGCGATTGAT
ATTGTGCTTG AAGGGGGTAT TTGGCTACCA GAGCACACCA ATATTAGTGC CGATCAACAC
ACCGCTGCCG AACATCAACG TTTAGCAAAG CAATTAGCTC AACTTACGCC GCAGCAGTAC
ACCGTGCTAG CCAATATTGC CAATGGTCGG TTAAACAAAC AAATCGCTTA TGACTTAAAC
ATTAAAGAAA CCACAGTAAA AAAACATGTC TCAGCGATTT TACTTAAACT TGAAATCAAC
AATCGCACTC AAGCTGGGCT GGTGTTTCAA CAATTAATGA TTACTTCAAC TGAAAACCTG
CAGGTGGATG TAGCAGCCTC ATGA
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| Protein sequence | MMSQIKVAIA DDHPLFRAAL TQAVQKSVNN AQVLEAENFQ ELIAIVEQHP DIELIFIDLH
MPGNDGFTGL TLLQNHFPDI VVIMVSSDDQ PEIIRKAINF GASAFIPKSA NLTQISTAID
IVLEGGIWLP EHTNISADQH TAAEHQRLAK QLAQLTPQQY TVLANIANGR LNKQIAYDLN
IKETTVKKHV SAILLKLEIN NRTQAGLVFQ QLMITSTENL QVDVAAS
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