| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1182 |
|---|
| Symbol | |
|---|
| ID | 3716894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 1351126 |
|---|
| End bp | 1351776 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_346914 |
|---|
| Protein GI | 77457409 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.192356 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAT ACGACATCCT GATTGCCGAT GATCACCCTC TTTTTCGTAG CGCACTGCAT
CAAGCGGTGA CGATGGGCCT TGGCCCGGAC GTACGAATGG TGGAGGTGGC GAGCATCGCC
GAGCTGGAAA CCCGCCTGAC CGAAAAGGCT GACTGGGATC TGGTGCTGCT GGACCTGAAC
ATGCCGGGCG CTTTCGGATT TTCCGGGCTG GTGATGCTGC GCGGTCAATA CCCGCAGATT
CCGGTGGTGA TGGTTTCGGC CCAGGAAGAA GCCTCGGTGA TGGTCAAGTC CCGGGAATTC
GGTGCCAGTG GTTTCATTCC CAAGTCCAGC GACCTGAGCG TGATTCAGGA AGCGGTGCGT
AAAGTGTTGG ACGGGGACGT GTTCTGGCCA CCCCAGGCGT TCGAAGCGGT CAGCGTTTCG
GATGAAGCCA AGGCTGCCAG CGATGGCCTC GCCAGCCTGA CGCCACAGCA GTTCCGGGTG
TTGACCATGG TCTGCGAAGG CTTGTTGAAC AAGCAGATCG CCTACGAGCT GAGCGTGTCC
GAAGCGACCA TCAAGGCCCA CGTCACGGCG ATTTTTCGCA AGTTGAACGT GCGAACCCGG
ACCCAGGCCG CTTTACTGCT GCAACAACTT GAGTCAATTC CGAGCCAGTA A
|
|---|
| Protein sequence | MATYDILIAD DHPLFRSALH QAVTMGLGPD VRMVEVASIA ELETRLTEKA DWDLVLLDLN
MPGAFGFSGL VMLRGQYPQI PVVMVSAQEE ASVMVKSREF GASGFIPKSS DLSVIQEAVR
KVLDGDVFWP PQAFEAVSVS DEAKAASDGL ASLTPQQFRV LTMVCEGLLN KQIAYELSVS
EATIKAHVTA IFRKLNVRTR TQAALLLQQL ESIPSQ
|
|---|
| |