| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02155 |
|---|
| Symbol | |
|---|
| ID | 6776244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 2320626 |
|---|
| End bp | 2321261 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642755593 |
|---|
| Product | putative regulator in two-component regulatory system ; LuxR family protein |
|---|
| Protein accession | YP_002126449 |
|---|
| Protein GI | 196156960 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGAA TTCTAGTAGC AGACGATCAC CCATTGTTTC GCGAGGCATT AAGCGGCGCG
TTGGAACCTT ACTTTGAAAA TGCGCAAATA ATTCAAGCGG GAAGCTTGGA CGATGCATTG
GAAAAGCTTA ATGAGTTTGA CGGTGTTGAA TTGGTGCTCC TTGACCTAAA TATGCCTGGT
GGTGAATATT TCAACGGTTT AATCACGCTT CGTGAACAAT ACCCGAATAT TCCGATTGGT
GTTGTATCTG GTAGTGACAC GGTAGAAGTT GTGGCACAAG TAATGAGTTT AGGGGCGCAA
GGTTTTATAC CGAAAGTGTC TGAAACGCGT GAAATTGCCC AAGCCATTGT TGATATCATT
GGCGGTAAGA AGTGGCTTCC TGAAGGTATG GAAGAAGAAC TAGAGAAAGT CGATGACGAG
CTTAAAGTGT TGCTCCAACG TTTTCGCGAG TTAACGCCTA AACAAATTCA AGTGCTTTCA
TATTTGCGTG CGGGTCTAAT GAACAAGCAA ATTGCACACG AGATGAACGT AACAGAAGCG
ACAATTAAAG CTCACATAAG CGCAATCTTA CGCAAGCTAG AAATTAACAC TCGTACTCAA
GCGGTATTGT TAATGGATAA GCTTCAACTC AGCTAA
|
|---|
| Protein sequence | MTRILVADDH PLFREALSGA LEPYFENAQI IQAGSLDDAL EKLNEFDGVE LVLLDLNMPG
GEYFNGLITL REQYPNIPIG VVSGSDTVEV VAQVMSLGAQ GFIPKVSETR EIAQAIVDII
GGKKWLPEGM EEELEKVDDE LKVLLQRFRE LTPKQIQVLS YLRAGLMNKQ IAHEMNVTEA
TIKAHISAIL RKLEINTRTQ AVLLMDKLQL S
|
|---|
| |