More than 300 homologs were found in PanDaTox collection
for query gene Tbd_2570 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  100 
 
 		 224 aa  449  1e-125  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  46.67 
 
 		 227 aa  172  2.9999999999999996e-42  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  44.12 
 
 		 210 aa  160  1e-38  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  42.15 
 
 		 224 aa  154  9e-37  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  41.35 
 
 		 221 aa  153  2e-36  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  40.28 
 
 		 221 aa  148  8e-35  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  37.5 
 
 		 221 aa  146  3e-34  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  40.95 
 
 		 209 aa  145  4.0000000000000006e-34  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  39.52 
 
 		 220 aa  145  4.0000000000000006e-34  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  39.81 
 
 		 222 aa  145  5e-34  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007952  Bxe_B1813  two component LuxR family transcriptional regulator  38.43 
 
 		 249 aa  143  2e-33  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.172477 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  39.81 
 
 		 238 aa  143  2e-33  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  37.96 
 
 		 219 aa  142  6e-33  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  38.5 
 
 		 215 aa  141  8e-33  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  38.79 
 
 		 220 aa  140  1.9999999999999998e-32  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  38.68 
 
 		 220 aa  140  1.9999999999999998e-32  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  38.68 
 
 		 220 aa  140  1.9999999999999998e-32  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  38.79 
 
 		 220 aa  140  1.9999999999999998e-32  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  37.56 
 
 		 215 aa  139  3.9999999999999997e-32  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  40 
 
 		 227 aa  139  4.999999999999999e-32  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  41.31 
 
 		 209 aa  138  4.999999999999999e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  38.32 
 
 		 220 aa  138  6e-32  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010623  Bphy_5117  two component LuxR family transcriptional regulator  36 
 
 		 253 aa  138  7e-32  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.180541 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  38.79 
 
 		 220 aa  138  7e-32  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  38.79 
 
 		 220 aa  137  8.999999999999999e-32  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  37.56 
 
 		 215 aa  137  2e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  38.43 
 
 		 219 aa  136  2e-31  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  38.32 
 
 		 220 aa  137  2e-31  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  38.99 
 
 		 219 aa  136  3.0000000000000003e-31  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  36.62 
 
 		 216 aa  135  4e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_010676  Bphyt_4850  two component transcriptional regulator, LuxR family  36.69 
 
 		 257 aa  135  6.0000000000000005e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0778424  normal  0.0399542 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  38.32 
 
 		 220 aa  135  6.0000000000000005e-31  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  36.7 
 
 		 220 aa  135  7.000000000000001e-31  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  35.89 
 
 		 209 aa  135  7.000000000000001e-31  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  36.94 
 
 		 219 aa  135  7.000000000000001e-31  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  36.41 
 
 		 232 aa  134  8e-31  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  36.62 
 
 		 215 aa  134  9.999999999999999e-31  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  38.1 
 
 		 215 aa  134  9.999999999999999e-31  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  36.15 
 
 		 216 aa  133  3e-30  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  42.65 
 
 		 217 aa  132  3.9999999999999996e-30  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  36.62 
 
 		 221 aa  132  5e-30  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  38.43 
 
 		 219 aa  132  6e-30  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  35.32 
 
 		 248 aa  132  6e-30  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  38.03 
 
 		 217 aa  132  6e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  37.38 
 
 		 216 aa  132  6e-30  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  38.03 
 
 		 217 aa  132  6e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  34.95 
 
 		 218 aa  131  6.999999999999999e-30  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_3355  two component transcriptional regulator, LuxR family  35.68 
 
 		 208 aa  131  6.999999999999999e-30  Thauera sp. MZ1T  Bacteria  normal  0.687232  n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  35.68 
 
 		 216 aa  131  7.999999999999999e-30  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  35.68 
 
 		 216 aa  131  7.999999999999999e-30  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  34.78 
 
 		 224 aa  131  7.999999999999999e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  36.62 
 
 		 221 aa  131  7.999999999999999e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  35.91 
 
 		 222 aa  130  1.0000000000000001e-29  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  36.84 
 
 		 221 aa  130  1.0000000000000001e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  36.84 
 
 		 221 aa  130  1.0000000000000001e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  38.46 
 
 		 211 aa  130  2.0000000000000002e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  37.86 
 
 		 209 aa  130  2.0000000000000002e-29  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  36.57 
 
 		 224 aa  129  3e-29  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  35.38 
 
 		 215 aa  129  3e-29  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  34.88 
 
 		 212 aa  129  4.0000000000000003e-29  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  36.84 
 
 		 221 aa  129  5.0000000000000004e-29  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  36.54 
 
 		 215 aa  129  5.0000000000000004e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  38.65 
 
 		 214 aa  129  5.0000000000000004e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  36.84 
 
 		 221 aa  128  7.000000000000001e-29  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  36.84 
 
 		 221 aa  128  8.000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  34.58 
 
 		 213 aa  128  8.000000000000001e-29  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  40.48 
 
 		 209 aa  127  1.0000000000000001e-28  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_007643  Rru_A2603  two component LuxR family transcriptional regulator  36.73 
 
 		 226 aa  126  2.0000000000000002e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0876088  n/a   
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  36.06 
 
 		 223 aa  126  2.0000000000000002e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  40.85 
 
 		 216 aa  125  4.0000000000000003e-28  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  34.3 
 
 		 219 aa  125  5e-28  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  37.26 
 
 		 221 aa  125  6e-28  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  35.58 
 
 		 224 aa  125  8.000000000000001e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  39.13 
 
 		 213 aa  124  1e-27  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  38.65 
 
 		 213 aa  124  1e-27  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  37.62 
 
 		 212 aa  124  1e-27  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  33.64 
 
 		 227 aa  124  1e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  35.58 
 
 		 224 aa  123  2e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  36.41 
 
 		 231 aa  124  2e-27  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  33.96 
 
 		 216 aa  123  2e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  37.32 
 
 		 209 aa  123  3e-27  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  35.35 
 
 		 216 aa  122  4e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  35.16 
 
 		 218 aa  122  4e-27  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  35.92 
 
 		 218 aa  121  7e-27  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  33.02 
 
 		 223 aa  121  8e-27  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  34.15 
 
 		 239 aa  121  9.999999999999999e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  33.49 
 
 		 223 aa  121  9.999999999999999e-27  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  33.49 
 
 		 223 aa  121  9.999999999999999e-27  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  32.27 
 
 		 251 aa  120  1.9999999999999998e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  33.02 
 
 		 223 aa  120  1.9999999999999998e-26  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  37.62 
 
 		 219 aa  120  1.9999999999999998e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0920509 
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  35.02 
 
 		 209 aa  119  3e-26  Haemophilus somnus 129PT  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  33.02 
 
 		 223 aa  119  3e-26  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  32.71 
 
 		 251 aa  119  3.9999999999999996e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  36.36 
 
 		 230 aa  119  3.9999999999999996e-26  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  34.29 
 
 		 252 aa  119  4.9999999999999996e-26  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  33.65 
 
 		 219 aa  118  7e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  34.13 
 
 		 225 aa  118  7.999999999999999e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  36.54 
 
 		 215 aa  118  9e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.463895 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  38.03 
 
 		 218 aa  117  9.999999999999999e-26  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
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