More than 300 homologs were found in PanDaTox collection
for query gene Nham_0273 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  100 
 
 
231 aa  456  1e-127  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  78.83 
 
 
224 aa  358  3e-98  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  82.43 
 
 
223 aa  356  1.9999999999999998e-97  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  79.91 
 
 
224 aa  343  2e-93  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  79.46 
 
 
224 aa  343  2e-93  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0588074 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  79.46 
 
 
225 aa  340  1e-92  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  68.57 
 
 
221 aa  282  3.0000000000000004e-75  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  67.62 
 
 
221 aa  276  2e-73  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  63.47 
 
 
224 aa  272  3e-72  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  61.27 
 
 
215 aa  239  2e-62  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  59.8 
 
 
215 aa  231  7.000000000000001e-60  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  57.84 
 
 
215 aa  231  8.000000000000001e-60  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  56.25 
 
 
220 aa  230  1e-59  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  55.4 
 
 
221 aa  227  1e-58  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  56.86 
 
 
216 aa  221  8e-57  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000136895 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  57.21 
 
 
214 aa  219  1.9999999999999999e-56  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  60.78 
 
 
215 aa  218  7.999999999999999e-56  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.463895 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  51.17 
 
 
220 aa  217  1e-55  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  51.64 
 
 
220 aa  216  2e-55  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  53.66 
 
 
219 aa  216  2e-55  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  51.64 
 
 
220 aa  216  2e-55  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  51.64 
 
 
220 aa  216  2e-55  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  50.7 
 
 
220 aa  216  2e-55  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  50.7 
 
 
220 aa  215  4e-55  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  54.59 
 
 
216 aa  215  5e-55  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  54.59 
 
 
216 aa  215  5e-55  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  51.17 
 
 
220 aa  215  5.9999999999999996e-55  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  54.19 
 
 
215 aa  214  9.999999999999999e-55  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  55.07 
 
 
216 aa  214  9.999999999999999e-55  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00000000317123 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  56.73 
 
 
213 aa  213  1.9999999999999998e-54  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  51.17 
 
 
220 aa  213  1.9999999999999998e-54  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  55 
 
 
215 aa  213  2.9999999999999995e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  52.11 
 
 
220 aa  213  2.9999999999999995e-54  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  51.17 
 
 
238 aa  212  4.9999999999999996e-54  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  50.23 
 
 
220 aa  211  5.999999999999999e-54  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  54.5 
 
 
215 aa  210  1e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  56.25 
 
 
213 aa  209  2e-53  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  51.71 
 
 
219 aa  210  2e-53  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  53.23 
 
 
215 aa  210  2e-53  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  51.2 
 
 
219 aa  209  3e-53  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  53.69 
 
 
217 aa  208  5e-53  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  53.69 
 
 
217 aa  208  5e-53  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  50.24 
 
 
219 aa  207  1e-52  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  54 
 
 
216 aa  206  2e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.192356 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  50.72 
 
 
221 aa  206  2e-52  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  58.25 
 
 
218 aa  206  2e-52  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  51.67 
 
 
222 aa  204  6e-52  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  49.5 
 
 
227 aa  191  6e-48  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  47.24 
 
 
218 aa  186  2e-46  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  50.49 
 
 
209 aa  187  2e-46  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  47.5 
 
 
223 aa  186  2e-46  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  47.5 
 
 
223 aa  186  3e-46  Shewanella sp. MR-7  Bacteria  normal  normal  0.358413 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  47.5 
 
 
223 aa  185  4e-46  Shewanella sp. MR-4  Bacteria  normal  normal  0.335218 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  52.58 
 
 
211 aa  185  6e-46  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  46.75 
 
 
251 aa  184  7e-46  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  42.71 
 
 
213 aa  184  9e-46  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  47.87 
 
 
251 aa  183  2.0000000000000003e-45  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  52.94 
 
 
209 aa  181  1e-44  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  46.73 
 
 
210 aa  180  1e-44  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  48.02 
 
 
211 aa  180  2e-44  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  45.83 
 
 
219 aa  179  4e-44  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  51.47 
 
 
209 aa  178  4.999999999999999e-44  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  47.74 
 
 
216 aa  178  5.999999999999999e-44  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  43.66 
 
 
222 aa  178  5.999999999999999e-44  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  45.5 
 
 
223 aa  178  7e-44  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.211294 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  46.23 
 
 
210 aa  177  9e-44  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  48.54 
 
 
219 aa  177  1e-43  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  50 
 
 
216 aa  175  4e-43  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  47.24 
 
 
214 aa  174  7e-43  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  47.24 
 
 
214 aa  174  7e-43  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  46.3 
 
 
252 aa  173  1.9999999999999998e-42  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  46.73 
 
 
222 aa  173  1.9999999999999998e-42  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  45.89 
 
 
229 aa  173  1.9999999999999998e-42  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.190475 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  43.81 
 
 
212 aa  173  1.9999999999999998e-42  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  42.18 
 
 
223 aa  170  2e-41  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  42.27 
 
 
241 aa  163  2.0000000000000002e-39  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0133592 
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  44.6 
 
 
220 aa  161  8.000000000000001e-39  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  43.4 
 
 
216 aa  160  1e-38  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0522  two component LuxR family transcriptional regulator  42.79 
 
 
219 aa  160  1e-38  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  41.95 
 
 
214 aa  160  2e-38  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  41.59 
 
 
221 aa  157  2e-37  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  42.29 
 
 
224 aa  155  4e-37  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  38.25 
 
 
218 aa  154  1e-36  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  37.85 
 
 
219 aa  152  5e-36  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  46.31 
 
 
217 aa  152  5e-36  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal 
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  42.08 
 
 
244 aa  150  1e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  42.08 
 
 
244 aa  150  1e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.89842 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  41.94 
 
 
218 aa  147  2.0000000000000003e-34  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_009511  Swit_1159  two component LuxR family transcriptional regulator  42 
 
 
209 aa  144  1e-33  Sphingomonas wittichii RW1  Bacteria  normal  0.942847  normal  0.660482 
 
 
-
 
NC_007493  RSP_2882  two component LuxR family transcriptional regulator  43.07 
 
 
226 aa  142  6e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.533901  n/a   
 
 
-
 
NC_009049  Rsph17029_1528  two component LuxR family transcriptional regulator  43.07 
 
 
226 aa  141  8e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0620794 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  40.76 
 
 
221 aa  138  7e-32  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  35.98 
 
 
229 aa  137  1e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3305  LuxR family DNA-binding response regulator  38.81 
 
 
206 aa  137  2e-31  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  39.34 
 
 
221 aa  136  2e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  36.41 
 
 
224 aa  135  8e-31  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  39.34 
 
 
221 aa  134  9e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2536  two component transcriptional regulator, LuxR family protein  40.85 
 
 
216 aa  134  9e-31  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  39.62 
 
 
221 aa  133  1.9999999999999998e-30  Pseudomonas putida F1  Bacteria  normal  0.548338  normal 
 
 
-
 
NC_009952  Dshi_2674  two component transcriptional regulator  41.67 
 
 
228 aa  133  1.9999999999999998e-30  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00219271  normal 
 
 
-
 
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