| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2245 |
|---|
| Symbol | |
|---|
| ID | 6116515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2755269 |
|---|
| End bp | 2755925 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641633752 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001760621 |
|---|
| Protein GI | 170726595 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00227369 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0543921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAGG TCTTGATCGC AGATGATCAT CCACTATTTA GAGATGCAAT CGTGCACATT
TTTGGGAGTA AGTTTCCCGA CAGCACCACC TATGAAACTG AAGATATTGC ATCGACGTTA
GCCTTTGCAA AAGAGCACGA TGATATCGAC CTTATTTTGC TCGATCTCAA CATGCCTGGT
ATGTCTGGAC TCAATGGATT ATTAGATTTA AGTAATGAGT GCCCAACAAC ACCTGTTGTG
GTGGTTTCAG CAGAAAATAA GAAACAAGTT ATTCTACAGA CGATTGCGTA TGGCGCAGTA
GGATTTATCG CTAAATCCTC ATCGAAAGAG ACTATCGCAG AAGCGATAGA GACGGTTTTT
GAGGGTAATA TTTACCTGCC AGCGGATATC ATTCGTACCA AATCTAGCCC CAGCTCAAAG
AAAGAGTATC AGCTGCTGCC TGAGATGCTC TCATCACTCA CCCGTCGTCA ACTTATGGTG
TTGAAGTGCA TGACTAAAGG GGAGGCGAAC AAGCAGATCG CATACAACTT AAATGTGTCG
GAAACCACGG TTAAGTCCCA TGTGTCATCT ATCTTGAAAA AATTAGGGGT GTCAAACCGT
GTGCAGGCCG TTGTAGGCTG CAGTGATATC GATTTTAATC AATATCTCAA ACGTTAA
|
|---|
| Protein sequence | MYKVLIADDH PLFRDAIVHI FGSKFPDSTT YETEDIASTL AFAKEHDDID LILLDLNMPG
MSGLNGLLDL SNECPTTPVV VVSAENKKQV ILQTIAYGAV GFIAKSSSKE TIAEAIETVF
EGNIYLPADI IRTKSSPSSK KEYQLLPEML SSLTRRQLMV LKCMTKGEAN KQIAYNLNVS
ETTVKSHVSS ILKKLGVSNR VQAVVGCSDI DFNQYLKR
|
|---|
| |