More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_3138 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  100 
 
 
221 aa  451  1.0000000000000001e-126  Pseudomonas putida GB-1  Bacteria  normal  normal  0.892266 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  99.1 
 
 
221 aa  448  1e-125  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  99.1 
 
 
221 aa  448  1e-125  Pseudomonas putida F1  Bacteria  normal  0.548338  normal 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  88.24 
 
 
221 aa  376  1e-103  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal 
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  86.88 
 
 
221 aa  367  1e-101  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  86.43 
 
 
221 aa  365  1e-100  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  59.28 
 
 
218 aa  277  1e-73  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  60.63 
 
 
218 aa  263  1e-69  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  57.47 
 
 
219 aa  262  3e-69  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_008709  Ping_2536  two component transcriptional regulator, LuxR family protein  54.34 
 
 
216 aa  227  1e-58  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  43.4 
 
 
220 aa  180  1e-44  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  42.72 
 
 
221 aa  179  4e-44  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  41.47 
 
 
221 aa  174  9.999999999999999e-43  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  44.55 
 
 
216 aa  172  2.9999999999999996e-42  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.192356 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  43.66 
 
 
216 aa  171  5.999999999999999e-42  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000136895 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  44.98 
 
 
215 aa  171  5.999999999999999e-42  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  44.29 
 
 
221 aa  170  1e-41  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  44.29 
 
 
215 aa  170  2e-41  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  44.08 
 
 
216 aa  169  3e-41  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00000000317123 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  44.5 
 
 
217 aa  168  7e-41  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  44.5 
 
 
217 aa  168  7e-41  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  44.34 
 
 
216 aa  167  1e-40  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  44.34 
 
 
216 aa  167  1e-40  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  43 
 
 
209 aa  167  2e-40  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  41.86 
 
 
252 aa  166  2e-40  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  40.85 
 
 
222 aa  166  2.9999999999999998e-40  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  44.93 
 
 
211 aa  164  6.9999999999999995e-40  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  45.41 
 
 
209 aa  164  1.0000000000000001e-39  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  43.6 
 
 
215 aa  163  2.0000000000000002e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  42.86 
 
 
221 aa  163  2.0000000000000002e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  42.45 
 
 
238 aa  161  6e-39  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  40.09 
 
 
219 aa  159  3e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  39.9 
 
 
211 aa  159  3e-38  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  42.65 
 
 
215 aa  159  4e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  41.28 
 
 
220 aa  158  7e-38  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  44.93 
 
 
209 aa  157  9e-38  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  41.06 
 
 
219 aa  157  1e-37  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  38.97 
 
 
241 aa  157  1e-37  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0133592 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  41.28 
 
 
227 aa  156  2e-37  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  39.63 
 
 
212 aa  157  2e-37  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  41.1 
 
 
220 aa  156  2e-37  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  41.28 
 
 
220 aa  157  2e-37  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  41.1 
 
 
220 aa  156  3e-37  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  41.23 
 
 
224 aa  155  4e-37  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0588074 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  40.98 
 
 
213 aa  155  5.0000000000000005e-37  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  39.35 
 
 
224 aa  155  6e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  39.62 
 
 
224 aa  155  6e-37  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  38.92 
 
 
210 aa  154  8e-37  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  41.83 
 
 
219 aa  154  8e-37  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  40.98 
 
 
216 aa  154  9e-37  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  40.47 
 
 
220 aa  154  1e-36  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  41.43 
 
 
220 aa  154  1e-36  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  42.16 
 
 
223 aa  154  1e-36  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  41.43 
 
 
220 aa  153  2e-36  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  40.2 
 
 
227 aa  153  2e-36  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  41.43 
 
 
220 aa  153  2e-36  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0584  two component response regulator  40.09 
 
 
215 aa  152  2.9999999999999998e-36  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  41.75 
 
 
223 aa  152  2.9999999999999998e-36  Shewanella sp. MR-4  Bacteria  normal  normal  0.335218 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  38.89 
 
 
224 aa  152  4e-36  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  38.42 
 
 
210 aa  152  4e-36  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  41.26 
 
 
223 aa  152  4e-36  Shewanella sp. MR-7  Bacteria  normal  normal  0.358413 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  41.9 
 
 
220 aa  152  4e-36  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  41.18 
 
 
223 aa  152  4e-36  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.211294 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  40.76 
 
 
215 aa  152  4e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  41.06 
 
 
219 aa  151  8.999999999999999e-36  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  36.92 
 
 
251 aa  150  1e-35  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  38.43 
 
 
225 aa  151  1e-35  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  37.44 
 
 
210 aa  150  1e-35  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  40.48 
 
 
219 aa  149  3e-35  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  38.43 
 
 
223 aa  149  3e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  36.92 
 
 
251 aa  149  4e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  37.74 
 
 
220 aa  149  5e-35  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  41.83 
 
 
218 aa  147  1.0000000000000001e-34  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  42.65 
 
 
214 aa  145  4.0000000000000006e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  38.42 
 
 
218 aa  144  8.000000000000001e-34  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  41.94 
 
 
217 aa  144  9e-34  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  39.13 
 
 
223 aa  144  1e-33  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  36.84 
 
 
224 aa  144  1e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  40 
 
 
222 aa  144  1e-33  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0522  two component LuxR family transcriptional regulator  40.38 
 
 
219 aa  143  2e-33  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  40.74 
 
 
224 aa  142  3e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  45.02 
 
 
209 aa  142  3e-33  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  40.29 
 
 
214 aa  141  8e-33  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  40.29 
 
 
214 aa  141  8e-33  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  38.01 
 
 
224 aa  140  1.9999999999999998e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal 
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  39.05 
 
 
222 aa  140  1.9999999999999998e-32  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  38.42 
 
 
229 aa  140  1.9999999999999998e-32  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.190475 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  36.62 
 
 
244 aa  139  3e-32  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.89842 
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  36.62 
 
 
244 aa  139  3e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  38.14 
 
 
219 aa  138  6e-32  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  39.35 
 
 
215 aa  138  6e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  39.15 
 
 
231 aa  137  1e-31  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  39.53 
 
 
214 aa  137  1e-31  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  34.15 
 
 
239 aa  137  2e-31  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  36.62 
 
 
219 aa  137  2e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  39.61 
 
 
220 aa  135  4e-31  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  34.38 
 
 
221 aa  135  6.0000000000000005e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  40 
 
 
215 aa  132  3e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.463895 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  34.31 
 
 
229 aa  132  3e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  41.67 
 
 
213 aa  132  3e-30  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
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