More than 300 homologs were found in PanDaTox collection
for query gene Rfer_2039 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  100 
 
 		 212 aa  421  1e-117  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  43.75 
 
 		 210 aa  154  8e-37  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  39.44 
 
 		 221 aa  139  1.9999999999999998e-32  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  39.91 
 
 		 227 aa  139  3e-32  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  37.62 
 
 		 224 aa  137  1e-31  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  38.16 
 
 		 209 aa  137  1e-31  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  38.84 
 
 		 224 aa  135  5e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  35.98 
 
 		 219 aa  133  1.9999999999999998e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  34.62 
 
 		 252 aa  132  3e-30  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  38.79 
 
 		 220 aa  132  3.9999999999999996e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  41.15 
 
 		 224 aa  132  5e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  37.44 
 
 		 222 aa  130  2.0000000000000002e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_3355  two component transcriptional regulator, LuxR family  39.9 
 
 		 208 aa  130  2.0000000000000002e-29  Thauera sp. MZ1T  Bacteria  normal  0.687232  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  35.85 
 
 		 221 aa  129  3e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  36.65 
 
 		 215 aa  129  3e-29  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  35.68 
 
 		 217 aa  126  2.0000000000000002e-28  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.482316 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  32.72 
 
 		 216 aa  126  2.0000000000000002e-28  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  34.91 
 
 		 221 aa  125  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  38.42 
 
 		 241 aa  125  6e-28  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  35.68 
 
 		 213 aa  124  9e-28  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  37.26 
 
 		 216 aa  124  9e-28  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009430  Rsph17025_4184  hypothetical protein  36.27 
 
 		 207 aa  124  1e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.400045  normal  0.380291 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  36.95 
 
 		 221 aa  124  1e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  38.65 
 
 		 214 aa  124  1e-27  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  34.8 
 
 		 223 aa  124  1e-27  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  38.07 
 
 		 232 aa  124  1e-27  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  35.71 
 
 		 251 aa  122  4e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  34.31 
 
 		 223 aa  122  4e-27  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  33.82 
 
 		 223 aa  122  4e-27  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  37.75 
 
 		 219 aa  122  5e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  34.55 
 
 		 224 aa  122  5e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  31.53 
 
 		 227 aa  122  5e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  36.82 
 
 		 227 aa  122  5e-27  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  37.2 
 
 		 209 aa  121  7e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  36.19 
 
 		 224 aa  120  9.999999999999999e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  34.76 
 
 		 251 aa  120  9.999999999999999e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  37.5 
 
 		 227 aa  120  9.999999999999999e-27  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  36.27 
 
 		 204 aa  120  9.999999999999999e-27  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  33.04 
 
 		 223 aa  120  9.999999999999999e-27  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  38.86 
 
 		 219 aa  120  9.999999999999999e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0920509 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  37.38 
 
 		 217 aa  120  9.999999999999999e-27  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  35.2 
 
 		 208 aa  120  1.9999999999999998e-26  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  36.07 
 
 		 220 aa  120  1.9999999999999998e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_011989  Avi_0584  two component response regulator  33.65 
 
 		 215 aa  119  3.9999999999999996e-26  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  36.06 
 
 		 221 aa  119  3.9999999999999996e-26  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  36.74 
 
 		 221 aa  119  3.9999999999999996e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  38.28 
 
 		 227 aa  118  4.9999999999999996e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  38.79 
 
 		 225 aa  118  4.9999999999999996e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  35.19 
 
 		 221 aa  118  6e-26  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  37.37 
 
 		 218 aa  118  6e-26  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  37.24 
 
 		 209 aa  118  7e-26  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  35.5 
 
 		 248 aa  118  7e-26  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  35.47 
 
 		 209 aa  117  9e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  38.24 
 
 		 244 aa  117  9e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  38.24 
 
 		 244 aa  117  9e-26  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.89842 
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  35.81 
 
 		 221 aa  117  9e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  33.03 
 
 		 225 aa  117  9.999999999999999e-26  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  35.58 
 
 		 221 aa  117  9.999999999999999e-26  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  35.58 
 
 		 221 aa  117  9.999999999999999e-26  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  38.65 
 
 		 213 aa  117  9.999999999999999e-26  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  39.52 
 
 		 218 aa  117  9.999999999999999e-26  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  33.5 
 
 		 224 aa  116  1.9999999999999998e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  36.36 
 
 		 216 aa  116  1.9999999999999998e-25  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  37.82 
 
 		 214 aa  116  1.9999999999999998e-25  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  37.82 
 
 		 214 aa  116  1.9999999999999998e-25  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  35 
 
 		 221 aa  115  3e-25  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_009972  Haur_4485  two component LuxR family transcriptional regulator  35.41 
 
 		 213 aa  116  3e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.310872  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  35.21 
 
 		 224 aa  115  3e-25  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  35.75 
 
 		 201 aa  116  3e-25  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  35.21 
 
 		 224 aa  115  3.9999999999999997e-25  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_013235  Namu_2635  two component transcriptional regulator, LuxR family  35.24 
 
 		 217 aa  115  3.9999999999999997e-25  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000528497  hitchhiker  0.00476816 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  35.35 
 
 		 210 aa  115  6e-25  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  36.92 
 
 		 213 aa  115  6e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_013757  Gobs_2941  two component transcriptional regulator, LuxR family  36.36 
 
 		 219 aa  114  6.9999999999999995e-25  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.911135  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  35.35 
 
 		 210 aa  115  6.9999999999999995e-25  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  38.16 
 
 		 213 aa  114  7.999999999999999e-25  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  34.74 
 
 		 224 aa  114  1.0000000000000001e-24  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  34.74 
 
 		 224 aa  114  1.0000000000000001e-24  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  36.19 
 
 		 214 aa  114  1.0000000000000001e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  37.24 
 
 		 209 aa  114  1.0000000000000001e-24  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  31.05 
 
 		 226 aa  113  2.0000000000000002e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  37.86 
 
 		 204 aa  113  2.0000000000000002e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  34.98 
 
 		 224 aa  113  2.0000000000000002e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  35.48 
 
 		 235 aa  114  2.0000000000000002e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  35.75 
 
 		 230 aa  113  2.0000000000000002e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  34 
 
 		 213 aa  113  2.0000000000000002e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_008463  PA14_46360  putative two-component response regulator  38.34 
 
 		 210 aa  113  2.0000000000000002e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.016821 
 
 
-
 
NC_013730  Slin_5409  two component transcriptional regulator, LuxR family  33.18 
 
 		 223 aa  113  2.0000000000000002e-24  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00220575  normal  1 
 
 
-
 
NC_013159  Svir_33010  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  34.26 
 
 		 223 aa  112  3e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.163463  normal  1 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  33.64 
 
 		 226 aa  112  3e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  36.14 
 
 		 212 aa  112  3e-24  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  38.12 
 
 		 209 aa  112  4.0000000000000004e-24  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  29.77 
 
 		 216 aa  112  4.0000000000000004e-24  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  32.55 
 
 		 213 aa  112  4.0000000000000004e-24  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  32 
 
 		 207 aa  112  5e-24  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  34.65 
 
 		 209 aa  112  5e-24  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal  1 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  32 
 
 		 207 aa  112  5e-24  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  32.09 
 
 		 215 aa  112  5e-24  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  34.8 
 
 		 215 aa  111  7.000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010510  Mrad2831_5839  two component LuxR family transcriptional regulator  36.76 
 
 		 198 aa  111  7.000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.242407  hitchhiker  0.00194364 
 
 
-
 
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