| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2173 |
|---|
| Symbol | |
|---|
| ID | 5193421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2466947 |
|---|
| End bp | 2467612 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640586630 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001267496 |
|---|
| Protein GI | 148547394 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.548338 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAAA TTCTGATTGC CGACGATCAC CCCCTGTTTC GCGAAGCCAT CCACAATGTC
ATCAGCGATG GCTTCCAGGG CAGCGAGGTC ATGGAGACCG CGGACCTTGA AAGCGCCCTG
GCCCTGACCC AGGCGCATGA CGACCTCGAC CTGATCCTGC TCGACCTGAA CATGCCCGGC
ATGCACGGCC TCAATGGCCT GATCACCCTG CGCAACGAGG CGCCGACCAC GCCGGTGGTC
ATCGTTTCGG CCGAGCAGGA AAAGCAGATC GTGCTGCAGG CCATTACCTA CGGTGCCGTG
GGCTTCATCA CCAAGTCGTC GCCACGCTCA CAGATGATCG AAGCGATCGA GCAGATCCTC
AATGGCAATG TCTACCTGCC GCCAGACATC ATCCGCGCAC AAAAAAACAG CACCAGCCGG
CGCCATAACG ATGCCCCAAG CTTCCCGCCG GAAATGCTCC AGGCCCTGAC CCGCAAGCAA
CTGCTGGTGC TCGAGCGCAT GACCAAAGGC GAATCGAACA AACAGATCGC CTACACGCTG
GACATCGCCG AAACCACAGT CAAGGCCCAC GTTTCGGCGA TCTTGCGCAA ACTTAATGTG
CACAACCGGG TACAAGCCAT CCTCAGTGCT GGCGATATCG ATTTTGCTGA TTATCTGCGC
CGTTGA
|
|---|
| Protein sequence | MYKILIADDH PLFREAIHNV ISDGFQGSEV METADLESAL ALTQAHDDLD LILLDLNMPG
MHGLNGLITL RNEAPTTPVV IVSAEQEKQI VLQAITYGAV GFITKSSPRS QMIEAIEQIL
NGNVYLPPDI IRAQKNSTSR RHNDAPSFPP EMLQALTRKQ LLVLERMTKG ESNKQIAYTL
DIAETTVKAH VSAILRKLNV HNRVQAILSA GDIDFADYLR R
|
|---|
| |