Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_5409 |
Symbol | |
ID | 8729176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 6579769 |
End bp | 6580440 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | |
Product | two component transcriptional regulator, LuxR family |
Protein accession | YP_003390175 |
Protein GI | 284040245 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00220575 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGATAC GAATTCTTAT TGCCGATGAC CATTCTGTAG TGAGAAAAGG CATTCGGATG CTGCTGGAAG ATGAAACCGA TATTCAAATC GTAGGCGAAG CTTCCGACGG CGACGAAGCC ATCGACCTGC TGGCCAGTAT CGGCACTGAT GTTTTACTGT TGGATATAAC CATGCCCCGA ATGTCAGGCA TCGAAGCCCT GAAAGTTATT TCAAAGAAAT ACCCGGCAGT TAGAACGCTC ATGTTCAGCA TGCATAGCAA CCCGGACTAC ATCGTAAAAG CGGTACAGCA CGGGGCGGCT GGTTATCTGC TGAAAGATAC GGGACTGGAA GAAATGCTAC GAGCTGTACG TACGGTGGTT GACGGTGATT TATACTATCC GCCGAATGCG TCTTCGGTCA TAATCCGGAG CCTTGTTCTG CCCAATGCCA ACCTGACGAA GGAACCCGCC AAGGCAGGGG GGAGCGTATC AAAATCCATC TGGAATCGAA TCACATCCCG CGAAGGACAG GTGCTGACCT GCCTGATTGA CGGCATGAGC AGTCCTGAGA TCGCTGAAAA GTTTGGCATC AGCCCCAACA CAGTAGCTAA TCAACGAGCC AGCATCATCC GCAAAGCGGG CGTTAAAAAC ACGGCTGATT TGATACGGCT GGCGCTGGAA GAGAAAAGAT AG
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Protein sequence | MPIRILIADD HSVVRKGIRM LLEDETDIQI VGEASDGDEA IDLLASIGTD VLLLDITMPR MSGIEALKVI SKKYPAVRTL MFSMHSNPDY IVKAVQHGAA GYLLKDTGLE EMLRAVRTVV DGDLYYPPNA SSVIIRSLVL PNANLTKEPA KAGGSVSKSI WNRITSREGQ VLTCLIDGMS SPEIAEKFGI SPNTVANQRA SIIRKAGVKN TADLIRLALE EKR
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