| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1943 |
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| Symbol | |
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| ID | 5110070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2141102 |
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| End bp | 2141767 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640503177 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001187436 |
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| Protein GI | 146306971 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.550145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTACAAGA TTCTGATTGC CGACGACCAC CCGCTGTTTC GCGAAGCCAT CCACAACGTC
ATCGCTGATG GCTTCCCCGG CAGCGAGATC ATGGAAACCG CCGACCTGGA CAGCGCCCTG
GAGCTGACCC AGCAGCACGA CGATCTCGAC CTTATCCTGC TCGACCTGAA CATGCCCGGC
ATGCACGGCC TGGGCGGGTT GATGAACCTG CGCAACGAGG CGCCGACCAT CCCGGTGGTG
ATCGTCTCGG CCGAGCAGGA CAAGCAAATC GTGCTGCAGG CCATCACCTA TGGGGCGGTG
GGCTTCATTA CCAAATCCTC GCCACGGACG CAGATGACCG ATGCCATCGC GCAGATACTC
GACGGCAACG TCTACCTGCC GCCCGACATC ATCCGCTCGC AGAAAAGCGG CAGCTCGCGC
CCGCACCACG ACACCCACAG CATTCCGCCG GAGCTGCTGC AGGCGCTGAC GCGCAAGCAG
CTGCTGGTGC TCGAACGCAT GACCAAGGGC GAATCCAACA AGCAGATCGC CTACAGCCTG
GATATCGCCG AAACCACGGT GAAGGCGCAT GTCTCGGCCA TCCTGCGCAA GCTCAACGTG
CACAACCGCG TACAGGCCAT TCTCTCGGCC GGCGATATCG ACTTCGCAGC CTACCTGCGC
CGCTGA
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| Protein sequence | MYKILIADDH PLFREAIHNV IADGFPGSEI METADLDSAL ELTQQHDDLD LILLDLNMPG
MHGLGGLMNL RNEAPTIPVV IVSAEQDKQI VLQAITYGAV GFITKSSPRT QMTDAIAQIL
DGNVYLPPDI IRSQKSGSSR PHHDTHSIPP ELLQALTRKQ LLVLERMTKG ESNKQIAYSL
DIAETTVKAH VSAILRKLNV HNRVQAILSA GDIDFAAYLR R
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