More than 300 homologs were found in PanDaTox collection
for query gene Avi_0584 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011989  Avi_0584  two component response regulator  100 
 
 		 215 aa  431  1e-120  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  80.47 
 
 		 215 aa  328  3e-89  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  81.4 
 
 		 215 aa  315  3e-85  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.463895 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  69.05 
 
 		 215 aa  298  5e-80  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  62.75 
 
 		 214 aa  239  2e-62  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  62.38 
 
 		 218 aa  239  2.9999999999999997e-62  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  63.73 
 
 		 213 aa  235  4e-61  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  63.24 
 
 		 213 aa  231  4.0000000000000004e-60  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  56.73 
 
 		 224 aa  230  1e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  57.08 
 
 		 221 aa  229  2e-59  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  55.66 
 
 		 221 aa  228  6e-59  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  61.27 
 
 		 231 aa  222  4e-57  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  54.81 
 
 		 224 aa  221  4.9999999999999996e-57  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  57.56 
 
 		 223 aa  221  9e-57  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  52.15 
 
 		 221 aa  219  1.9999999999999999e-56  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  52.36 
 
 		 220 aa  211  4.9999999999999996e-54  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  55.98 
 
 		 225 aa  211  7e-54  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  56.46 
 
 		 224 aa  209  3e-53  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  56.59 
 
 		 224 aa  208  4e-53  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  50.24 
 
 		 216 aa  202  3e-51  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  50.24 
 
 		 216 aa  202  3e-51  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  50.24 
 
 		 216 aa  201  5e-51  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  50.24 
 
 		 216 aa  201  6e-51  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  48.82 
 
 		 215 aa  197  1.0000000000000001e-49  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  50.97 
 
 		 215 aa  195  4.0000000000000005e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  49.29 
 
 		 215 aa  195  4.0000000000000005e-49  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  51.66 
 
 		 219 aa  194  6e-49  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  49.76 
 
 		 216 aa  194  8.000000000000001e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  50.23 
 
 		 219 aa  192  2e-48  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  51.42 
 
 		 219 aa  193  2e-48  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  51.44 
 
 		 215 aa  193  2e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  50.94 
 
 		 219 aa  193  2e-48  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  48.1 
 
 		 217 aa  192  2e-48  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  48.1 
 
 		 217 aa  192  2e-48  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  48.34 
 
 		 220 aa  192  3e-48  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  51.94 
 
 		 222 aa  191  6e-48  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  49.07 
 
 		 220 aa  191  7e-48  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  49.07 
 
 		 220 aa  191  8e-48  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  50.24 
 
 		 221 aa  191  9e-48  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  48.84 
 
 		 220 aa  190  1e-47  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  50 
 
 		 220 aa  188  5.999999999999999e-47  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  48.84 
 
 		 220 aa  188  5.999999999999999e-47  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  49.53 
 
 		 220 aa  187  1e-46  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  49.53 
 
 		 220 aa  187  1e-46  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  49.53 
 
 		 220 aa  187  1e-46  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  50 
 
 		 220 aa  184  1.0000000000000001e-45  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  47.57 
 
 		 209 aa  182  3e-45  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  47.49 
 
 		 238 aa  182  3e-45  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  48.54 
 
 		 209 aa  181  5.0000000000000004e-45  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  47.32 
 
 		 211 aa  179  2e-44  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  46.6 
 
 		 218 aa  176  2e-43  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  43.63 
 
 		 227 aa  175  5e-43  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  44.61 
 
 		 223 aa  174  9.999999999999999e-43  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  45.59 
 
 		 210 aa  172  2.9999999999999996e-42  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  44.76 
 
 		 210 aa  172  2.9999999999999996e-42  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  46.57 
 
 		 216 aa  171  6.999999999999999e-42  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  43.63 
 
 		 223 aa  171  1e-41  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  43.63 
 
 		 223 aa  170  2e-41  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  43.14 
 
 		 223 aa  169  3e-41  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  46.63 
 
 		 219 aa  168  7e-41  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  48.51 
 
 		 209 aa  167  1e-40  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  41.83 
 
 		 211 aa  166  2.9999999999999998e-40  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  40.1 
 
 		 212 aa  165  5.9999999999999996e-40  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  45.1 
 
 		 214 aa  163  2.0000000000000002e-39  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  45.1 
 
 		 214 aa  163  2.0000000000000002e-39  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  41.92 
 
 		 213 aa  161  5.0000000000000005e-39  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  43.14 
 
 		 223 aa  161  6e-39  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  45.59 
 
 		 229 aa  161  8.000000000000001e-39  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.190475 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  45.89 
 
 		 251 aa  160  9e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  45.89 
 
 		 251 aa  160  2e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_008228  Patl_0522  two component LuxR family transcriptional regulator  42.31 
 
 		 219 aa  156  2e-37  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  42.79 
 
 		 252 aa  155  3e-37  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  40.74 
 
 		 222 aa  154  1e-36  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  41.71 
 
 		 224 aa  152  2.9999999999999998e-36  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal  1 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  44.29 
 
 		 219 aa  150  1e-35  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  43.69 
 
 		 222 aa  150  2e-35  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  43.75 
 
 		 216 aa  149  3e-35  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  41.12 
 
 		 221 aa  147  1.0000000000000001e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  42.23 
 
 		 216 aa  145  3e-34  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  43.52 
 
 		 217 aa  145  3e-34  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  42.31 
 
 		 241 aa  146  3e-34  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  41.71 
 
 		 214 aa  144  7.0000000000000006e-34  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  43.07 
 
 		 244 aa  144  9e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  43.07 
 
 		 244 aa  144  9e-34  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.89842 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  41.12 
 
 		 221 aa  144  1e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_2674  two component transcriptional regulator  41.4 
 
 		 228 aa  142  3e-33  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00219271  normal  1 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  40.55 
 
 		 221 aa  139  1.9999999999999998e-32  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  40.55 
 
 		 221 aa  140  1.9999999999999998e-32  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_007493  RSP_2882  two component LuxR family transcriptional regulator  38.86 
 
 		 226 aa  139  3e-32  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.533901  n/a   
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  40.45 
 
 		 221 aa  139  3e-32  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_009049  Rsph17029_1528  two component LuxR family transcriptional regulator  38.86 
 
 		 226 aa  139  3.9999999999999997e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.0620794 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  37.91 
 
 		 218 aa  138  7e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  40.09 
 
 		 221 aa  137  8.999999999999999e-32  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  43.75 
 
 		 220 aa  137  8.999999999999999e-32  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  35.85 
 
 		 221 aa  136  3.0000000000000003e-31  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  37.31 
 
 		 236 aa  135  5e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal  1 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  36.62 
 
 		 224 aa  134  9.999999999999999e-31  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  38.64 
 
 		 224 aa  132  3e-30  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  40.1 
 
 		 218 aa  130  1.0000000000000001e-29  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_004347  SO_3305  LuxR family DNA-binding response regulator  38.76 
 
 		 206 aa  129  5.0000000000000004e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
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