| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4850 |
|---|
| Symbol | |
|---|
| ID | 6280302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 970057 |
|---|
| End bp | 970830 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642615937 |
|---|
| Product | two component transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_001888585 |
|---|
| Protein GI | 187919554 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0778424 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0399542 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTC TTGTAGCCGA CGACCATGAA CTGATCCGGC AAGGCGTCAA AGGCATGCTG
CGCGGCCTCG ATCCCGACGC CCAGTTCGAC GAAGCCGACA ACTGGGAGAC GCTTGCCCTG
CTCGCGCGTC CCGACGCCGA TCACGATCTC GCCATTGTCG ATCTGCATAT GCCGGGCATG
AGCGGCGCTT CATCGCTCGA AGTGCTGTTG AAGGCGAATC CCGCGCTGCC GCTCGTCGTT
CTCTCCGCCG AAGAATCGCC CGACGAAATG CGCGCGGTGC TGGCCGCCGG CGCGCTCGGT
TTCGTGCCGA AGCGCCAGCC CGCCAGCGTC ATGCTCAAGG CCATCGAACT GGTGCTTTCA
GGCGGCGCTT ATGTGCCGAT GGAAGCGCTC AGCCTGCTGG GCTCGCGCGA CGCGCAAGCC
GCGCCCGCGC GTGCTGAAGC GCTTGCCGAA CCGGCGCCGC AGCATGCGGC TCCGGCCGGT
GCGCACGCAC CCAGCCAGGG CGGCGGCGCT ACGCTCACCG AACCTCTTAC GCAGATCCAG
GCACTTCAGC CGCACCAGCA GCATCTGCTG GAGAATCTGT CGCCGCGTCA GCAGGACATC
ATGCGGCTCG TGCATCGCGG CTGGACCAAC AAGATGATCG CGCGCGACCT GGGCGTCGCG
GAAGGCACGG TGAAGGTGCA TCTGTCGGTG ATCTTCCGGG CGCTCGGTGT GCATAACCGG
TCGACGGCGA TCGCCGTTAT CAATGGCTGG CTGGAAGCTG GGAAAACTTT GTAG
|
|---|
| Protein sequence | MKFLVADDHE LIRQGVKGML RGLDPDAQFD EADNWETLAL LARPDADHDL AIVDLHMPGM
SGASSLEVLL KANPALPLVV LSAEESPDEM RAVLAAGALG FVPKRQPASV MLKAIELVLS
GGAYVPMEAL SLLGSRDAQA APARAEALAE PAPQHAAPAG AHAPSQGGGA TLTEPLTQIQ
ALQPHQQHLL ENLSPRQQDI MRLVHRGWTN KMIARDLGVA EGTVKVHLSV IFRALGVHNR
STAIAVINGW LEAGKTL
|
|---|
| |