| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3598 |
|---|
| Symbol | |
|---|
| ID | 8021285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 150440 |
|---|
| End bp | 151096 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644832389 |
|---|
| Product | two component transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_002983530 |
|---|
| Protein GI | 241665171 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.329097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.731815 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTC GCATCCTGCT CATCGACGAC CACACCCTGT TCCGCTCGGG TATCCGGCTC
CTGCTGCAGC GCCAGTCCGA CTTCGAGGTG GTGGACGAGG CCGCCGACGG CCTGGAAGGC
ATCAAGCTCG CCAAGCGGCA TCAGCCCGAC GTGATCCTGC TGGACCTGAA CATGCCGGGC
CTGTCGGGGC TGGAAACGCT TCAGCTACTG GTGCAGGACC TGCCCCTCGC GGCCGTCGTG
GTGCTGACCG TTTCGGAAGA GGCAGACGAA CTGAAAGCCG CGTTGCGCGA TGGCGCGCGC
GGCTACCTGC TCAAGAACAT CGAGGCCGAG ACGCTGGTGG CCGGCATACG CCGCGCCGCA
GCCGGTGAGC CCGTGATCTC CGACCGCATG ACGGCCAAGC TCGTCGCGCA TTTCCGTGCC
CCGGAAAAGG CGCCGCCCGC CGCCACCACG CCGATGCCCG ACAGGCTGAC ACCGCGCGAG
CGCGAGATCG TCAAGGGCCT GGCGCGTGGC GAAAGCAACA AGGAGATCGC GCGTACCCTC
GACGTTGCCG AGAGCACCGT GAAGATCCAC GTGCAGAACG TCCTCAAGAA GCTGAACCTG
ACGAGCCGGG TGCAAGTGGC TGTCTATGCG GTCGAGCACG GACTCAACGG CGGCTAG
|
|---|
| Protein sequence | MTIRILLIDD HTLFRSGIRL LLQRQSDFEV VDEAADGLEG IKLAKRHQPD VILLDLNMPG
LSGLETLQLL VQDLPLAAVV VLTVSEEADE LKAALRDGAR GYLLKNIEAE TLVAGIRRAA
AGEPVISDRM TAKLVAHFRA PEKAPPAATT PMPDRLTPRE REIVKGLARG ESNKEIARTL
DVAESTVKIH VQNVLKKLNL TSRVQVAVYA VEHGLNGG
|
|---|
| |