Gene Smed_3954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3954 
Symbol 
ID5318188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp404412 
End bp405101 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content60% 
IMG OID640775764 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001312697 
Protein GI150376101 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACGGA CAGCCTTGCC CGTTCATTCG CTTTCGATAA AGTCGGCCCT GGTGATCGAT 
GATCATCCGC TCTATTGCGA TGCGCTGGCC GCGACGATGG AAAGCACCTT CAATACACGC
CGGATCAGAA CGGCGACGTC GCTGAGTGAA GCGCTGCAGC AGTTGCGGTT GCGCTTCTCG
CCCGATCTGA TCATGCTCGA TCTCAACCTG CCCGACGCTT CGGGCCTGAG CGGCTTTCTG
AAGATCAAGG AGAAGATGCC CGATATACCG GTCATTGTGA TCTCCGCCTT CACGTCGCAC
GACGTCGTTC AATCGGTCAT GGCCGCCGGT GCCGCGGGCT TTATTCCCAA GGACATCGAT
CGCCATAATT TTCAGGAGGC GATGCAGGAT ATCTGGAACG GCAAGACCTA TGTGCCGCCG
GGCTATGCGG TTCAGGCGCG CGCGACTGCC GCGGACCAGT CGGCCGAGAC GATCTCACGC
AAGATCGCCC ATCTGTCGCA GCAGCAGACC CGCATACTGA GTCTGATCTG CGAAGGCATG
CCGAACAAGC TGATCGCCTA TGAGATGCAA CTTGCCGAGG CGACCGTCAA GGCGCATATC
ACGGCGCTTC TGCGCCGGCT GGGTGTCCAT AACCGCACCC AGGCGGCCAT GCTGGTCCGC
GAAGTATCGA TCCGCCACAG CCTTCAATGA
 
Protein sequence
MPRTALPVHS LSIKSALVID DHPLYCDALA ATMESTFNTR RIRTATSLSE ALQQLRLRFS 
PDLIMLDLNL PDASGLSGFL KIKEKMPDIP VIVISAFTSH DVVQSVMAAG AAGFIPKDID
RHNFQEAMQD IWNGKTYVPP GYAVQARATA ADQSAETISR KIAHLSQQQT RILSLICEGM
PNKLIAYEMQ LAEATVKAHI TALLRRLGVH NRTQAAMLVR EVSIRHSLQ