Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3954 |
Symbol | |
ID | 5318188 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 404412 |
End bp | 405101 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640775764 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001312697 |
Protein GI | 150376101 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACGGA CAGCCTTGCC CGTTCATTCG CTTTCGATAA AGTCGGCCCT GGTGATCGAT GATCATCCGC TCTATTGCGA TGCGCTGGCC GCGACGATGG AAAGCACCTT CAATACACGC CGGATCAGAA CGGCGACGTC GCTGAGTGAA GCGCTGCAGC AGTTGCGGTT GCGCTTCTCG CCCGATCTGA TCATGCTCGA TCTCAACCTG CCCGACGCTT CGGGCCTGAG CGGCTTTCTG AAGATCAAGG AGAAGATGCC CGATATACCG GTCATTGTGA TCTCCGCCTT CACGTCGCAC GACGTCGTTC AATCGGTCAT GGCCGCCGGT GCCGCGGGCT TTATTCCCAA GGACATCGAT CGCCATAATT TTCAGGAGGC GATGCAGGAT ATCTGGAACG GCAAGACCTA TGTGCCGCCG GGCTATGCGG TTCAGGCGCG CGCGACTGCC GCGGACCAGT CGGCCGAGAC GATCTCACGC AAGATCGCCC ATCTGTCGCA GCAGCAGACC CGCATACTGA GTCTGATCTG CGAAGGCATG CCGAACAAGC TGATCGCCTA TGAGATGCAA CTTGCCGAGG CGACCGTCAA GGCGCATATC ACGGCGCTTC TGCGCCGGCT GGGTGTCCAT AACCGCACCC AGGCGGCCAT GCTGGTCCGC GAAGTATCGA TCCGCCACAG CCTTCAATGA
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Protein sequence | MPRTALPVHS LSIKSALVID DHPLYCDALA ATMESTFNTR RIRTATSLSE ALQQLRLRFS PDLIMLDLNL PDASGLSGFL KIKEKMPDIP VIVISAFTSH DVVQSVMAAG AAGFIPKDID RHNFQEAMQD IWNGKTYVPP GYAVQARATA ADQSAETISR KIAHLSQQQT RILSLICEGM PNKLIAYEMQ LAEATVKAHI TALLRRLGVH NRTQAAMLVR EVSIRHSLQ
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