| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00712 |
|---|
| Symbol | |
|---|
| ID | 6778321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 748535 |
|---|
| End bp | 749179 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642754146 |
|---|
| Product | putative regulator in two-component regulatory system ; LuxR family protein |
|---|
| Protein accession | YP_002125022 |
|---|
| Protein GI | 196155533 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.169527 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAACCC TTCTAATCGC TGATGATCAT CCGCTGTATC GCGATGCACT AAGAGGCGCG
TTATCGTTGT CATTGCCAGC CTTAACGCTT AAAGAGGCTG GCGACTTAAC CACCACAGTC
GATATTCTTA ATAACGAGGA TATCGATTTG CTGTTACTCG ATTTACATAT GCCGGGCAGC
AATGATTTGT TCGGCTTATT GCACATTCGT AAACTCTTTC CTGAACTTCC CGTTGCAGTC
GTGTCGGGAA CCGAAGATAC CACTCTCATC TCGAAAATAA TTAGTGTTGG CGCACTTGGC
TTTATCCCTA AAACTGCCAG TGCACAAGAC ATTGCTAATG CCGTAGAAGC GATTTTAGAT
GGCGACGTAT GGTTACCTGA AAACTTAAGT GAAAATGTTG ATGAAGTGAA CGAAGCGTTT
TCTGAGTTAG CAGATAAGGT AGCATCGCTT ACCCCATCGC AATACAAAGT ATTGTGTTAC
ATGCGAGATG GGTTGTTGAA TAAGCAAATT GGCTTTAACT TAGATATTGC TGAGGCTACC
GTGAAAGCCC ACGTTACGGC TATCTTCAAA AAGCTAGGAA TAAATAATCG CACGCAGGCG
GTGCTTATTG CTTCTCAACT TGAACTGGAA CCGCCATCTC AGTAG
|
|---|
| Protein sequence | MITLLIADDH PLYRDALRGA LSLSLPALTL KEAGDLTTTV DILNNEDIDL LLLDLHMPGS
NDLFGLLHIR KLFPELPVAV VSGTEDTTLI SKIISVGALG FIPKTASAQD IANAVEAILD
GDVWLPENLS ENVDEVNEAF SELADKVASL TPSQYKVLCY MRDGLLNKQI GFNLDIAEAT
VKAHVTAIFK KLGINNRTQA VLIASQLELE PPSQ
|
|---|
| |