More than 300 homologs were found in PanDaTox collection
for query gene Nham_2943 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007964  Nham_2943  two component LuxR family transcriptional regulator  100 
 
 		 351 aa  725    Nitrobacter hamburgensis X14  Bacteria  normal  0.692808  n/a   
 
 
-
 
NC_007406  Nwi_0957  LuxR family transcriptional regulator  72.89 
 
 		 342 aa  488  1e-137  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.553991  normal  0.407109 
 
 
-
 
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  43.81 
 
 		 259 aa  173  5e-42  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal  1 
 
 
-
 
NC_011371  Rleg2_6421  two component transcriptional regulator, LuxR family  41.94 
 
 		 251 aa  171  2e-41  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal  1 
 
 
-
 
NC_012852  Rleg_6225  two component transcriptional regulator, LuxR family  41.04 
 
 		 258 aa  170  4e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.173155 
 
 
-
 
NC_008254  Meso_2574  two component LuxR family transcriptional regulator  41.59 
 
 		 253 aa  168  1e-40  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009620  Smed_4826  two component LuxR family transcriptional regulator  40.71 
 
 		 267 aa  165  8e-40  Sinorhizobium medicae WSM419  Bacteria  normal  0.847801  normal  0.0520322 
 
 
-
 
NC_004311  BRA0415  LuxR family transcriptional regulator  42.72 
 
 		 255 aa  160  4e-38  Brucella suis 1330  Bacteria  normal  0.272996  n/a   
 
 
-
 
NC_009504  BOV_A0358  LuxR family transcriptional regulator  42.72 
 
 		 255 aa  160  4e-38  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  38.06 
 
 		 258 aa  158  1e-37  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  37.33 
 
 		 275 aa  149  1.0000000000000001e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal  1 
 
 
-
 
NC_009049  Rsph17029_1961  response regulator receiver protein  38.32 
 
 		 247 aa  135  9.999999999999999e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_0316  LuxR family transcriptional regulator  38.76 
 
 		 213 aa  130  3e-29  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.155222  n/a   
 
 
-
 
NC_009428  Rsph17025_0978  two component LuxR family transcriptional regulator  37.38 
 
 		 247 aa  130  4.0000000000000003e-29  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.159022  normal  1 
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  38.32 
 
 		 241 aa  117  1.9999999999999998e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  33.65 
 
 		 267 aa  106  6e-22  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_009050  Rsph17029_3701  two component LuxR family transcriptional regulator  33.8 
 
 		 253 aa  104  3e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.567008  normal  0.770716 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  31.71 
 
 		 232 aa  94.4  2e-18  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_011369  Rleg2_0250  two component transcriptional regulator, LuxR family  31.12 
 
 		 260 aa  93.6  5e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.664516  normal  1 
 
 
-
 
NC_007493  RSP_2591  two component LuxR family transcriptional regulator  30.19 
 
 		 235 aa  91.7  2e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.211381  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  39.69 
 
 		 216 aa  90.9  3e-17  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  29.25 
 
 		 236 aa  89  1e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  30.22 
 
 		 243 aa  89  1e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_009049  Rsph17029_1249  two component LuxR family transcriptional regulator  29.72 
 
 		 235 aa  87.8  2e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009668  Oant_3972  two component LuxR family transcriptional regulator  31 
 
 		 251 aa  87.4  3e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.111106  n/a   
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  31.53 
 
 		 245 aa  86.7  5e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal  1 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  27.67 
 
 		 218 aa  87  5e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  30.35 
 
 		 214 aa  86.7  6e-16  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  26.54 
 
 		 219 aa  86.3  7e-16  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  34.46 
 
 		 201 aa  86.3  7e-16  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  26.42 
 
 		 239 aa  85.9  9e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  37.4 
 
 		 216 aa  85.9  0.000000000000001  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  37.4 
 
 		 216 aa  85.9  0.000000000000001  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  38.93 
 
 		 215 aa  85.1  0.000000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  39.69 
 
 		 215 aa  84.7  0.000000000000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  38.17 
 
 		 215 aa  84.3  0.000000000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  27.75 
 
 		 219 aa  84  0.000000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  32.45 
 
 		 227 aa  83.6  0.000000000000005  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  36.64 
 
 		 216 aa  83.6  0.000000000000005  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  36.64 
 
 		 216 aa  83.2  0.000000000000006  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  30.8 
 
 		 219 aa  82.4  0.000000000000009  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  35.38 
 
 		 213 aa  82.8  0.000000000000009  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  30.87 
 
 		 224 aa  82  0.00000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  38.93 
 
 		 215 aa  82.4  0.00000000000001  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  39.53 
 
 		 221 aa  82  0.00000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  30.69 
 
 		 211 aa  82  0.00000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  33.59 
 
 		 220 aa  82  0.00000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  34.81 
 
 		 221 aa  82  0.00000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  34.62 
 
 		 238 aa  81.3  0.00000000000002  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  37.8 
 
 		 210 aa  80.9  0.00000000000003  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  33.57 
 
 		 221 aa  80.5  0.00000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  40.31 
 
 		 221 aa  80.1  0.00000000000005  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  27.19 
 
 		 236 aa  80.1  0.00000000000005  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal  1 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  34.85 
 
 		 221 aa  80.1  0.00000000000005  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  28.92 
 
 		 214 aa  79.7  0.00000000000007  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  26.07 
 
 		 251 aa  79.3  0.00000000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  30.28 
 
 		 219 aa  79.3  0.00000000000008  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  36.36 
 
 		 214 aa  79.7  0.00000000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  34.62 
 
 		 220 aa  79.3  0.00000000000009  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  34.62 
 
 		 220 aa  79  0.0000000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  34.62 
 
 		 220 aa  79.3  0.0000000000001  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  35.82 
 
 		 224 aa  78.6  0.0000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  35.34 
 
 		 217 aa  79  0.0000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  29.19 
 
 		 214 aa  79  0.0000000000001  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  26.32 
 
 		 251 aa  79  0.0000000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  35.34 
 
 		 217 aa  79  0.0000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  34.62 
 
 		 220 aa  79.3  0.0000000000001  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  34.62 
 
 		 220 aa  79  0.0000000000001  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  29.19 
 
 		 214 aa  79  0.0000000000001  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  30.72 
 
 		 204 aa  78.2  0.0000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  30 
 
 		 221 aa  78.2  0.0000000000002  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  29.11 
 
 		 252 aa  78.2  0.0000000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  33.59 
 
 		 219 aa  78.2  0.0000000000002  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  29.56 
 
 		 227 aa  78.6  0.0000000000002  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013124  Afer_1981  two component transcriptional regulator, LuxR family  31.84 
 
 		 222 aa  78.2  0.0000000000002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  35.38 
 
 		 220 aa  78.6  0.0000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  34.85 
 
 		 220 aa  77.4  0.0000000000003  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  36.64 
 
 		 210 aa  77.4  0.0000000000003  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  27.72 
 
 		 218 aa  77.4  0.0000000000003  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  34.62 
 
 		 220 aa  77.8  0.0000000000003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  37.8 
 
 		 216 aa  77  0.0000000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  34.85 
 
 		 220 aa  77.4  0.0000000000004  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  36.07 
 
 		 209 aa  76.6  0.0000000000005  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_011205  SeD_A2589  transcriptional regulator NarP  29.56 
 
 		 215 aa  76.6  0.0000000000005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  0.167087 
 
 
-
 
NC_011083  SeHA_C2486  transcriptional regulator NarP  29.56 
 
 		 215 aa  77  0.0000000000005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.187807  normal  0.0115945 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  32.82 
 
 		 217 aa  76.6  0.0000000000005  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_011080  SNSL254_A2430  transcriptional regulator NarP  29.56 
 
 		 215 aa  76.6  0.0000000000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.426027  normal  0.504703 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  33.08 
 
 		 220 aa  76.6  0.0000000000006  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  37.88 
 
 		 222 aa  76.6  0.0000000000006  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  28.5 
 
 		 216 aa  76.6  0.0000000000006  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  33.33 
 
 		 219 aa  76.3  0.0000000000008  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  32.17 
 
 		 219 aa  75.9  0.0000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  29.29 
 
 		 221 aa  75.9  0.000000000001  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  27.92 
 
 		 223 aa  75.5  0.000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal  1 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  28.92 
 
 		 209 aa  75.9  0.000000000001  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  36.43 
 
 		 218 aa  75.5  0.000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  27.04 
 
 		 207 aa  75.5  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  33.59 
 
 		 221 aa  75.9  0.000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  27.23 
 
 		 216 aa  75.5  0.000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  29.29 
 
 		 221 aa  75.9  0.000000000001  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
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