More than 300 homologs were found in PanDaTox collection
for query gene Smed_4801 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  100 
 
 		 259 aa  529  1e-149  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal  1 
 
 
-
 
NC_012852  Rleg_6225  two component transcriptional regulator, LuxR family  62.4 
 
 		 258 aa  310  1e-83  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.173155 
 
 
-
 
NC_011371  Rleg2_6421  two component transcriptional regulator, LuxR family  63.11 
 
 		 251 aa  303  2.0000000000000002e-81  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal  1 
 
 
-
 
NC_009620  Smed_4826  two component LuxR family transcriptional regulator  58.22 
 
 		 267 aa  264  8e-70  Sinorhizobium medicae WSM419  Bacteria  normal  0.847801  normal  0.0520322 
 
 
-
 
NC_004311  BRA0415  LuxR family transcriptional regulator  58.14 
 
 		 255 aa  258  5.0000000000000005e-68  Brucella suis 1330  Bacteria  normal  0.272996  n/a   
 
 
-
 
NC_009504  BOV_A0358  LuxR family transcriptional regulator  58.14 
 
 		 255 aa  258  5.0000000000000005e-68  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  52.79 
 
 		 258 aa  252  5.000000000000001e-66  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_008254  Meso_2574  two component LuxR family transcriptional regulator  52.8 
 
 		 253 aa  226  4e-58  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_2943  two component LuxR family transcriptional regulator  43.81 
 
 		 351 aa  173  2.9999999999999996e-42  Nitrobacter hamburgensis X14  Bacteria  normal  0.692808  n/a   
 
 
-
 
NC_007406  Nwi_0957  LuxR family transcriptional regulator  41.9 
 
 		 342 aa  167  2e-40  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.553991  normal  0.407109 
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  39.33 
 
 		 241 aa  164  2.0000000000000002e-39  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_1961  response regulator receiver protein  41.98 
 
 		 247 aa  162  4.0000000000000004e-39  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_0978  two component LuxR family transcriptional regulator  42.2 
 
 		 247 aa  162  5.0000000000000005e-39  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.159022  normal  1 
 
 
-
 
NC_007493  RSP_0316  LuxR family transcriptional regulator  42.44 
 
 		 213 aa  159  5e-38  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.155222  n/a   
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  38.1 
 
 		 275 aa  152  5.9999999999999996e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal  1 
 
 
-
 
NC_009050  Rsph17029_3701  two component LuxR family transcriptional regulator  36.71 
 
 		 253 aa  131  1.0000000000000001e-29  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.567008  normal  0.770716 
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  35.62 
 
 		 267 aa  110  2.0000000000000002e-23  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  30.14 
 
 		 243 aa  89  6e-17  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_009668  Oant_3972  two component LuxR family transcriptional regulator  30.46 
 
 		 251 aa  87.8  1e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.111106  n/a   
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  33.8 
 
 		 218 aa  87  2e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_0250  two component transcriptional regulator, LuxR family  31.03 
 
 		 260 aa  87.4  2e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.664516  normal  1 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  28.97 
 
 		 215 aa  87.8  2e-16  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  36.09 
 
 		 220 aa  87  3e-16  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  30.14 
 
 		 210 aa  87  3e-16  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  37.96 
 
 		 210 aa  86.7  4e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  35.53 
 
 		 232 aa  86.3  5e-16  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  33.8 
 
 		 218 aa  84.7  0.000000000000001  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  36.43 
 
 		 201 aa  85.1  0.000000000000001  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  31.07 
 
 		 245 aa  84  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal  1 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  32.87 
 
 		 219 aa  83.6  0.000000000000003  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  29.52 
 
 		 224 aa  83.2  0.000000000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  34.64 
 
 		 227 aa  82.8  0.000000000000004  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  29.49 
 
 		 210 aa  82.4  0.000000000000006  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  37.84 
 
 		 214 aa  81.3  0.00000000000001  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  37.67 
 
 		 224 aa  80.9  0.00000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  31.54 
 
 		 227 aa  81.3  0.00000000000002  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  36.36 
 
 		 216 aa  80.5  0.00000000000002  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  28.37 
 
 		 215 aa  79.7  0.00000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.463895 
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  27.91 
 
 		 215 aa  79.3  0.00000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  31.91 
 
 		 238 aa  79.3  0.00000000000006  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  28.95 
 
 		 221 aa  79  0.00000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  32.14 
 
 		 216 aa  78.6  0.0000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  28.82 
 
 		 248 aa  78.2  0.0000000000001  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  34.09 
 
 		 221 aa  78.2  0.0000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  28.77 
 
 		 214 aa  77.4  0.0000000000002  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  32.43 
 
 		 221 aa  77.4  0.0000000000002  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  37.12 
 
 		 224 aa  77.4  0.0000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  28.77 
 
 		 214 aa  77.4  0.0000000000002  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  32.43 
 
 		 221 aa  77  0.0000000000003  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  38.06 
 
 		 209 aa  77  0.0000000000003  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  32.97 
 
 		 227 aa  77  0.0000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  31.06 
 
 		 224 aa  77  0.0000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  32.43 
 
 		 221 aa  77  0.0000000000003  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  32.86 
 
 		 216 aa  76.6  0.0000000000004  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  31.43 
 
 		 251 aa  76.6  0.0000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  31.43 
 
 		 251 aa  75.9  0.0000000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  34.33 
 
 		 216 aa  75.9  0.0000000000006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  30.5 
 
 		 220 aa  75.9  0.0000000000006  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  30.28 
 
 		 220 aa  75.9  0.0000000000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  33.1 
 
 		 215 aa  75.5  0.0000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  31.25 
 
 		 221 aa  75.5  0.0000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  30 
 
 		 220 aa  75.5  0.0000000000008  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  32.14 
 
 		 216 aa  75.5  0.0000000000009  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  30.5 
 
 		 220 aa  75.5  0.0000000000009  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  30.5 
 
 		 220 aa  75.1  0.0000000000009  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  29.08 
 
 		 220 aa  75.5  0.0000000000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  32.14 
 
 		 216 aa  75.5  0.0000000000009  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  31.43 
 
 		 219 aa  75.1  0.000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  31.72 
 
 		 211 aa  74.7  0.000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  29.79 
 
 		 220 aa  75.1  0.000000000001  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  29.79 
 
 		 220 aa  75.1  0.000000000001  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  29.08 
 
 		 220 aa  74.7  0.000000000001  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  32.19 
 
 		 227 aa  75.1  0.000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  29.79 
 
 		 220 aa  75.1  0.000000000001  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  30.07 
 
 		 219 aa  73.9  0.000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  32.14 
 
 		 216 aa  74.7  0.000000000002  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  29.29 
 
 		 219 aa  73.9  0.000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  28.57 
 
 		 217 aa  74.7  0.000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  35.48 
 
 		 213 aa  74.3  0.000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  32.86 
 
 		 209 aa  74.3  0.000000000002  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  32.14 
 
 		 217 aa  74.3  0.000000000002  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  28.57 
 
 		 221 aa  74.3  0.000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  35.48 
 
 		 213 aa  73.6  0.000000000003  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  35.71 
 
 		 204 aa  73.6  0.000000000003  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  30.56 
 
 		 221 aa  73.6  0.000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008709  Ping_2536  two component transcriptional regulator, LuxR family protein  32.17 
 
 		 216 aa  73.6  0.000000000003  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  30.5 
 
 		 219 aa  73.2  0.000000000004  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  32.58 
 
 		 221 aa  73.2  0.000000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_007794  Saro_1627  two component LuxR family transcriptional regulator  27.53 
 
 		 244 aa  72.8  0.000000000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0484719  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  28.37 
 
 		 223 aa  72.8  0.000000000006  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  31.47 
 
 		 209 aa  72.4  0.000000000007  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009620  Smed_4816  response regulator receiver protein  34.92 
 
 		 248 aa  72.4  0.000000000007  Sinorhizobium medicae WSM419  Bacteria  normal  0.890736  normal  0.794324 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  33.33 
 
 		 221 aa  72.4  0.000000000007  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  32.35 
 
 		 241 aa  72  0.000000000008  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  36.29 
 
 		 214 aa  71.6  0.00000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  32.61 
 
 		 218 aa  71.6  0.00000000001  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_009636  Smed_2837  response regulator receiver protein  30 
 
 		 262 aa  71.2  0.00000000001  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000311945  normal  0.812847 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  33.08 
 
 		 216 aa  71.6  0.00000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  31.11 
 
 		 212 aa  71.2  0.00000000001  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  30.64 
 
 		 218 aa  71.6  0.00000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
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