More than 300 homologs were found in PanDaTox collection
for query gene Smed_2837 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009636  Smed_2837  response regulator receiver protein  100 
 
 		 262 aa  539  9.999999999999999e-153  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000311945  normal  0.812847 
 
 
-
 
NC_011369  Rleg2_3999  transcriptional regulator, LuxR family  47.24 
 
 		 260 aa  225  5.0000000000000005e-58  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0000000117104  normal  1 
 
 
-
 
NC_012850  Rleg_4328  transcriptional regulator, LuxR family  44.57 
 
 		 260 aa  222  4.9999999999999996e-57  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00000000127099  normal  0.0225245 
 
 
-
 
NC_009620  Smed_4816  response regulator receiver protein  39.38 
 
 		 248 aa  97.8  1e-19  Sinorhizobium medicae WSM419  Bacteria  normal  0.890736  normal  0.794324 
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  27.6 
 
 		 241 aa  82.8  0.000000000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  28.86 
 
 		 275 aa  80.5  0.00000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal  1 
 
 
-
 
NC_009523  RoseRS_0691  two component LuxR family transcriptional regulator  33.47 
 
 		 227 aa  79  0.00000000000008  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0394761 
 
 
-
 
NC_009767  Rcas_0211  two component LuxR family transcriptional regulator  31.22 
 
 		 227 aa  77.8  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.196171  normal  0.645513 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  31.89 
 
 		 227 aa  77  0.0000000000003  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  27.12 
 
 		 245 aa  73.9  0.000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal  1 
 
 
-
 
NC_011369  Rleg2_0250  two component transcriptional regulator, LuxR family  26.17 
 
 		 260 aa  73.9  0.000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.664516  normal  1 
 
 
-
 
NC_007406  Nwi_0957  LuxR family transcriptional regulator  25.33 
 
 		 342 aa  73.6  0.000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.553991  normal  0.407109 
 
 
-
 
NC_010622  Bphy_1975  two component LuxR family transcriptional regulator  31.9 
 
 		 293 aa  73.2  0.000000000005  Burkholderia phymatum STM815  Bacteria  normal  0.0150451  normal  1 
 
 
-
 
NC_008254  Meso_2574  two component LuxR family transcriptional regulator  29.72 
 
 		 253 aa  72.8  0.000000000005  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  27.64 
 
 		 258 aa  72.8  0.000000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_011894  Mnod_5613  transcriptional regulator, LuxR family  28.92 
 
 		 238 aa  72.8  0.000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  34.62 
 
 		 216 aa  71.6  0.00000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  30 
 
 		 259 aa  71.2  0.00000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal  1 
 
 
-
 
NC_004311  BRA0415  LuxR family transcriptional regulator  28.76 
 
 		 255 aa  70.5  0.00000000002  Brucella suis 1330  Bacteria  normal  0.272996  n/a   
 
 
-
 
NC_009504  BOV_A0358  LuxR family transcriptional regulator  28.76 
 
 		 255 aa  70.5  0.00000000002  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_010681  Bphyt_1379  two component transcriptional regulator, LuxR family  30.49 
 
 		 292 aa  69.7  0.00000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0210202  hitchhiker  0.00446461 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  29.69 
 
 		 209 aa  69.7  0.00000000005  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  26.32 
 
 		 267 aa  68.2  0.0000000001  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  31.65 
 
 		 243 aa  67.8  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_007964  Nham_2943  two component LuxR family transcriptional regulator  31.75 
 
 		 351 aa  67.8  0.0000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.692808  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  35.83 
 
 		 209 aa  66.6  0.0000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  50 
 
 		 217 aa  66.2  0.0000000005  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_007951  Bxe_A3176  two component LuxR family transcriptional regulator  29.38 
 
 		 292 aa  65.9  0.0000000006  Burkholderia xenovorans LB400  Bacteria  normal  0.0570221  normal  0.472976 
 
 
-
 
NC_013170  Ccur_03610  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  40.96 
 
 		 470 aa  65.1  0.000000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.166414  normal  0.0491532 
 
 
-
 
NC_009620  Smed_4826  two component LuxR family transcriptional regulator  30.86 
 
 		 267 aa  65.1  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.847801  normal  0.0520322 
 
 
-
 
NC_011729  PCC7424_1418  two component transcriptional regulator, LuxR family  40.82 
 
 		 249 aa  64.7  0.000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_012852  Rleg_6225  two component transcriptional regulator, LuxR family  35.04 
 
 		 258 aa  63.9  0.000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.173155 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  29 
 
 		 215 aa  64.7  0.000000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  41.67 
 
 		 236 aa  63.5  0.000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  54.24 
 
 		 208 aa  63.5  0.000000003  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  63.5  0.000000003  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal  1 
 
 
-
 
NC_011729  PCC7424_0164  two component transcriptional regulator, LuxR family  32.8 
 
 		 234 aa  63.9  0.000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0441129 
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  31.21 
 
 		 218 aa  63.2  0.000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  31.28 
 
 		 227 aa  63.2  0.000000004  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011371  Rleg2_6421  two component transcriptional regulator, LuxR family  33.88 
 
 		 251 aa  63.2  0.000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal  1 
 
 
-
 
NC_007434  BURPS1710b_1471  DNA-binding response regulator  30.61 
 
 		 363 aa  62.8  0.000000005  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.0000000100474  n/a   
 
 
-
 
NC_009076  BURPS1106A_1334  putative DNA-binding response regulator  30.61 
 
 		 279 aa  62.8  0.000000005  Burkholderia pseudomallei 1106a  Bacteria  normal  0.07086  n/a   
 
 
-
 
NC_008687  Pden_4339  response regulator receiver protein  36.07 
 
 		 233 aa  62.8  0.000000005  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009074  BURPS668_1325  putative DNA-binding response regulator  30.61 
 
 		 279 aa  62.8  0.000000005  Burkholderia pseudomallei 668  Bacteria  normal  0.0852238  n/a   
 
 
-
 
NC_009511  Swit_4199  regulatory protein, LuxR  52.63 
 
 		 855 aa  62.8  0.000000006  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.142655 
 
 
-
 
NC_008700  Sama_0646  response regulator receiver protein  50 
 
 		 209 aa  62.8  0.000000006  Shewanella amazonensis SB2B  Bacteria  normal  0.0492071  normal  1 
 
 
-
 
NC_008740  Maqu_1584  regulatory protein, LuxR  39.8 
 
 		 916 aa  62.8  0.000000006  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  36.21 
 
 		 216 aa  62.4  0.000000007  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  35.07 
 
 		 210 aa  62.4  0.000000007  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009997  Sbal195_3836  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  62.4  0.000000008  Shewanella baltica OS195  Bacteria  hitchhiker  0.00000136397  normal  0.0231387 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  32.18 
 
 		 213 aa  62  0.000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.0500394 
 
 
-
 
NC_009052  Sbal_0792  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  62.4  0.000000008  Shewanella baltica OS155  Bacteria  hitchhiker  0.000000151034  n/a   
 
 
-
 
NC_011663  Sbal223_3654  two component transcriptional regulator, LuxR family  50 
 
 		 209 aa  62.4  0.000000008  Shewanella baltica OS223  Bacteria  unclonable  0.000000000464283  hitchhiker  0.00000781977 
 
 
-
 
NC_009665  Shew185_3713  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  62.4  0.000000008  Shewanella baltica OS185  Bacteria  hitchhiker  0.000000000161759  n/a   
 
 
-
 
NC_009511  Swit_0926  regulatory protein, LuxR  41.18 
 
 		 878 aa  62.4  0.000000008  Sphingomonas wittichii RW1  Bacteria  normal  0.289088  normal  1 
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  27.27 
 
 		 223 aa  62  0.000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009784  VIBHAR_05152  protein-glutamate methylesterase  51.92 
 
 		 222 aa  62  0.000000009  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010172  Mext_3579  regulatory protein LuxR  33.33 
 
 		 213 aa  62  0.000000009  Methylobacterium extorquens PA1  Bacteria  normal  0.0227422  normal  1 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  31.43 
 
 		 224 aa  61.6  0.00000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_3982  DNA-binding nitrate/nitrite response regulator  50 
 
 		 209 aa  61.2  0.00000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011757  Mchl_4715  two component transcriptional regulator, LuxR family  35.79 
 
 		 253 aa  62  0.00000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.525745 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  45.57 
 
 		 242 aa  61.6  0.00000001  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_010172  Mext_4346  regulatory protein LuxR  35.79 
 
 		 253 aa  62  0.00000001  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_1057  transcriptional regulator, LuxR family  38.32 
 
 		 486 aa  61.6  0.00000001  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.113368 
 
 
-
 
NC_009049  Rsph17029_1249  two component LuxR family transcriptional regulator  41.46 
 
 		 235 aa  61.6  0.00000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_2591  two component LuxR family transcriptional regulator  41.46 
 
 		 235 aa  62  0.00000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.211381  n/a   
 
 
-
 
NC_007511  Bcep18194_B1210  ATP-dependent transcription regulator LuxR  50.98 
 
 		 889 aa  61.6  0.00000001  Burkholderia sp. 383  Bacteria  normal  0.603589  normal  1 
 
 
-
 
NC_010725  Mpop_4863  two component transcriptional regulator, LuxR family  37.35 
 
 		 263 aa  61.6  0.00000001  Methylobacterium populi BJ001  Bacteria  normal  0.937693  normal  0.105083 
 
 
-
 
NC_009831  Ssed_0929  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  61.6  0.00000001  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000567962  normal  1 
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  62  0.00000001  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_008321  Shewmr4_0657  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  61.6  0.00000001  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000493749  normal  0.229808 
 
 
-
 
NC_008322  Shewmr7_3365  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  61.6  0.00000001  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000651556  normal  0.0242167 
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  51.79 
 
 		 209 aa  61.6  0.00000001  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
NC_008577  Shewana3_0656  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  61.6  0.00000001  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000830399  normal  0.140804 
 
 
-
 
NC_006348  BMA1795  DNA-binding response regulator  29.93 
 
 		 279 aa  61.2  0.00000002  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0488628  n/a   
 
 
-
 
NC_012791  Vapar_3549  transcriptional regulator, LuxR family  47.76 
 
 		 1022 aa  61.2  0.00000002  Variovorax paradoxus S110  Bacteria  normal  0.642921  n/a   
 
 
-
 
NC_007413  Ava_1558  two component LuxR family transcriptional regulator  39.18 
 
 		 240 aa  61.2  0.00000002  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.142258 
 
 
-
 
NC_007510  Bcep18194_A4514  LuxR family transcriptional regulator  33.66 
 
 		 263 aa  60.8  0.00000002  Burkholderia sp. 383  Bacteria  normal  0.0333975  normal  0.669249 
 
 
-
 
NC_013457  VEA_001275  transcriptional regulator VpsT  51.92 
 
 		 222 aa  60.8  0.00000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  27.35 
 
 		 220 aa  61.2  0.00000002  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  27.35 
 
 		 220 aa  61.2  0.00000002  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_009080  BMA10247_0448  DNA-binding response regulator  29.93 
 
 		 279 aa  61.2  0.00000002  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.00573595  n/a   
 
 
-
 
NC_009438  Sputcn32_0683  two component LuxR family transcriptional regulator  50 
 
 		 209 aa  61.2  0.00000002  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000388278  n/a   
 
 
-
 
NC_009719  Plav_1148  regulatory protein LuxR  53.45 
 
 		 921 aa  61.2  0.00000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.108504  normal  1 
 
 
-
 
NC_013159  Svir_38740  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  48.28 
 
 		 250 aa  61.2  0.00000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008836  BMA10229_A0704  DNA-binding response regulator  29.93 
 
 		 279 aa  61.2  0.00000002  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000213253  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1165  DNA-binding response regulator  29.93 
 
 		 279 aa  61.2  0.00000002  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.0000000742681  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  27.78 
 
 		 216 aa  60.8  0.00000002  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_009253  Dred_0925  response regulator receiver protein  49.3 
 
 		 119 aa  60.1  0.00000003  Desulfotomaculum reducens MI-1  Bacteria  normal  0.592282  n/a   
 
 
-
 
NC_013739  Cwoe_4359  transcriptional regulator, LuxR family  45.76 
 
 		 302 aa  60.5  0.00000003  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_4096  two component LuxR family transcriptional regulator  41.77 
 
 		 237 aa  60.5  0.00000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.811447  normal  0.807841 
 
 
-
 
NC_011312  VSAL_I2858  probable CsgAB operon transcriptional regulatory protein  51.56 
 
 		 215 aa  60.1  0.00000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.256874  n/a   
 
 
-
 
NC_014248  Aazo_2840  LuxR family two component transcriptional regulator  32.56 
 
 		 238 aa  60.5  0.00000003  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_007651  BTH_I1094  DNA-binding response regulator  30.94 
 
 		 279 aa  60.1  0.00000003  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000582737  n/a   
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  50.88 
 
 		 209 aa  60.5  0.00000003  Haemophilus somnus 129PT  Bacteria  normal  1  n/a   
 
 
-
 
NC_011884  Cyan7425_1053  two component transcriptional regulator, LuxR family  46.38 
 
 		 236 aa  60.5  0.00000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.295708  normal  0.0294181 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  50 
 
 		 214 aa  60.1  0.00000003  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.749326 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  26.91 
 
 		 220 aa  60.5  0.00000003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  46.03 
 
 		 219 aa  60.1  0.00000004  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_3763  two component LuxR family transcriptional regulator  50.88 
 
 		 221 aa  60.1  0.00000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.0403461 
 
 
-
 
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