More than 300 homologs were found in PanDaTox collection
for query gene Nham_3000 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  100 
 
 
263 aa  535  1e-151  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_011894  Mnod_6830  two component transcriptional regulator, LuxR family  38.2 
 
 
270 aa  129  4.0000000000000003e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1627  two component LuxR family transcriptional regulator  35.87 
 
 
244 aa  122  9e-27  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0484719  n/a   
 
 
-
 
NC_010725  Mpop_4863  two component transcriptional regulator, LuxR family  34.46 
 
 
263 aa  120  1.9999999999999998e-26  Methylobacterium populi BJ001  Bacteria  normal  0.937693  normal  0.105083 
 
 
-
 
NC_011757  Mchl_4715  two component transcriptional regulator, LuxR family  32.95 
 
 
253 aa  117  9.999999999999999e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.525745 
 
 
-
 
NC_010172  Mext_4346  regulatory protein LuxR  32.95 
 
 
253 aa  117  9.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5598  two component transcriptional regulator, LuxR family  35.14 
 
 
287 aa  113  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738825  n/a   
 
 
-
 
NC_011894  Mnod_5613  transcriptional regulator, LuxR family  34.76 
 
 
238 aa  106  5e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4598  two component LuxR family transcriptional regulator  35.8 
 
 
236 aa  93.2  4e-18  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1006  two component LuxR family transcriptional regulator  34.48 
 
 
219 aa  87.8  1e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3578  regulatory protein LuxR  29.39 
 
 
253 aa  87  3e-16  Methylobacterium extorquens PA1  Bacteria  normal  0.0721369  normal 
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  31.84 
 
 
214 aa  86.7  4e-16  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  31.43 
 
 
224 aa  85.5  9e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  29.79 
 
 
222 aa  84.3  0.000000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  31.39 
 
 
221 aa  84.3  0.000000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  30.52 
 
 
220 aa  81.6  0.00000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3764  two component LuxR family transcriptional regulator  36.84 
 
 
232 aa  82  0.00000000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1848  transcriptional regulator NarL  34.15 
 
 
215 aa  80.5  0.00000000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0602  nitrate/nitrite response regulator  30.19 
 
 
219 aa  80.5  0.00000000000002  Psychrobacter arcticus 273-4  Bacteria  normal  0.790372  normal 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  28.38 
 
 
221 aa  80.1  0.00000000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  39.34 
 
 
204 aa  80.1  0.00000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  29.49 
 
 
218 aa  79.7  0.00000000000004  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_006348  BMA1736  DNA-binding response regulator NarL  28.99 
 
 
233 aa  79.7  0.00000000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2764  DNA-binding response regulator NarL  28.99 
 
 
233 aa  79.7  0.00000000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  0.922757  n/a   
 
 
-
 
NC_009076  BURPS1106A_2686  nitrate/nitrite response regulator protein NarL  28.99 
 
 
233 aa  79.7  0.00000000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  33.14 
 
 
223 aa  79.7  0.00000000000004  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal 
 
 
-
 
NC_009074  BURPS668_2630  nitrate/nitrite response regulator protein NarL  28.99 
 
 
233 aa  79.7  0.00000000000004  Burkholderia pseudomallei 668  Bacteria  normal  0.14617  n/a   
 
 
-
 
NC_009080  BMA10247_1519  DNA-binding response regulator NarL  28.99 
 
 
233 aa  79.7  0.00000000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  0.281442  n/a   
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  29.49 
 
 
218 aa  79.7  0.00000000000004  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_008785  BMASAVP1_A2246  DNA-binding response regulator NarL  28.99 
 
 
233 aa  79.7  0.00000000000004  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3072  DNA-binding response regulator NarL  28.99 
 
 
233 aa  79.7  0.00000000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  27.03 
 
 
213 aa  79.3  0.00000000000005  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  25.65 
 
 
218 aa  79.7  0.00000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  30.86 
 
 
217 aa  79.3  0.00000000000006  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_011662  Tmz1t_2630  two component transcriptional regulator, LuxR family  30.46 
 
 
243 aa  79.3  0.00000000000006  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  29.15 
 
 
211 aa  79.3  0.00000000000006  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2318  transcriptional regulator NarL  36.25 
 
 
216 aa  79.3  0.00000000000006  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1849  DNA-binding response regulator NarL  28.99 
 
 
233 aa  78.6  0.00000000000009  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1898  transcriptional regulator NarL  35.62 
 
 
216 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.335981 
 
 
-
 
NC_011205  SeD_A1556  transcriptional regulator NarL  35.62 
 
 
216 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.109518 
 
 
-
 
NC_011149  SeAg_B1373  transcriptional regulator NarL  35.62 
 
 
216 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.276843  n/a   
 
 
-
 
NC_011083  SeHA_C1962  transcriptional regulator NarL  35.62 
 
 
216 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.356331 
 
 
-
 
NC_011094  SeSA_A1904  transcriptional regulator NarL  35.62 
 
 
216 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  27.78 
 
 
219 aa  78.6  0.0000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  29.96 
 
 
227 aa  77.4  0.0000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01199  DNA-binding response regulator in two-component regulatory system with NarX (or NarQ)  35.62 
 
 
216 aa  76.6  0.0000000000004  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2425  two component transcriptional regulator, LuxR family  35.62 
 
 
216 aa  76.6  0.0000000000004  Escherichia coli DH1  Bacteria  hitchhiker  0.00984481  n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  27.83 
 
 
219 aa  76.6  0.0000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1919  transcriptional regulator NarL  35.62 
 
 
216 aa  76.6  0.0000000000004  Escherichia coli SMS-3-5  Bacteria  normal  0.397816  normal  0.11445 
 
 
-
 
NC_012892  B21_01209  hypothetical protein  35.62 
 
 
216 aa  76.6  0.0000000000004  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1704  transcriptional regulator NarL  35.62 
 
 
216 aa  76.6  0.0000000000004  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.276657  normal 
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  28.75 
 
 
216 aa  76.3  0.0000000000004  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  28.69 
 
 
217 aa  76.6  0.0000000000004  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.332036 
 
 
-
 
NC_009800  EcHS_A1330  transcriptional regulator NarL  35.62 
 
 
216 aa  76.6  0.0000000000004  Escherichia coli HS  Bacteria  normal  0.724195  n/a   
 
 
-
 
NC_009801  EcE24377A_1371  transcriptional regulator NarL  35.62 
 
 
216 aa  76.6  0.0000000000004  Escherichia coli E24377A  Bacteria  normal  0.213666  n/a   
 
 
-
 
NC_010468  EcolC_2402  transcriptional regulator NarL  35.62 
 
 
216 aa  76.6  0.0000000000004  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.0000198441 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  28.84 
 
 
225 aa  76.6  0.0000000000004  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  27.51 
 
 
219 aa  76.3  0.0000000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  29.02 
 
 
215 aa  75.5  0.0000000000007  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  28.09 
 
 
217 aa  75.5  0.0000000000008  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  25.78 
 
 
215 aa  75.1  0.0000000000009  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  25.21 
 
 
207 aa  74.7  0.000000000001  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_009430  Rsph17025_4184  hypothetical protein  36.07 
 
 
207 aa  74.7  0.000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.400045  normal  0.380291 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  28.14 
 
 
227 aa  74.7  0.000000000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  31.29 
 
 
226 aa  75.1  0.000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010658  SbBS512_E1388  transcriptional regulator NarL  35 
 
 
216 aa  75.1  0.000000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1379  two component transcriptional regulator, LuxR family  27.42 
 
 
292 aa  74.7  0.000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0210202  hitchhiker  0.00446461 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  32.89 
 
 
221 aa  73.9  0.000000000002  Pseudomonas putida F1  Bacteria  normal  0.548338  normal 
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  28.91 
 
 
219 aa  74.3  0.000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal 
 
 
-
 
NC_012917  PC1_2262  transcriptional regulator NarL  35 
 
 
216 aa  74.3  0.000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0331529  n/a   
 
 
-
 
NC_007951  Bxe_A1815  two component LuxR family transcriptional regulator  30.77 
 
 
213 aa  74.3  0.000000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.922696  normal  0.34679 
 
 
-
 
NC_008146  Mmcs_1056  two component LuxR family transcriptional regulator  31.41 
 
 
219 aa  73.9  0.000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3654  two component transcriptional regulator, LuxR family  26.38 
 
 
209 aa  74.3  0.000000000002  Shewanella baltica OS223  Bacteria  unclonable  0.000000000464283  hitchhiker  0.00000781977 
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  28.75 
 
 
209 aa  73.9  0.000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  26.78 
 
 
246 aa  73.9  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  36.8 
 
 
209 aa  73.9  0.000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_008705  Mkms_1072  two component LuxR family transcriptional regulator  31.41 
 
 
219 aa  73.9  0.000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.562029  normal  0.0679961 
 
 
-
 
NC_009077  Mjls_1083  two component LuxR family transcriptional regulator  31.41 
 
 
219 aa  73.9  0.000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.605869  normal 
 
 
-
 
NC_002936  DET0432  LuxR family DNA-binding response regulator  30 
 
 
232 aa  73.6  0.000000000003  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.00543066  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  26.64 
 
 
224 aa  73.9  0.000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  28.05 
 
 
219 aa  73.6  0.000000000003  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_39510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  23.93 
 
 
216 aa  73.6  0.000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.657091 
 
 
-
 
NC_007951  Bxe_A3176  two component LuxR family transcriptional regulator  29.52 
 
 
292 aa  73.6  0.000000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.0570221  normal  0.472976 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  27.23 
 
 
228 aa  73.6  0.000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  30.05 
 
 
236 aa  73.9  0.000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  29.11 
 
 
222 aa  73.6  0.000000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1159  two component LuxR family transcriptional regulator  31.67 
 
 
209 aa  73.6  0.000000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.942847  normal  0.660482 
 
 
-
 
NC_009438  Sputcn32_0683  two component LuxR family transcriptional regulator  29.38 
 
 
209 aa  73.6  0.000000000003  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000388278  n/a   
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  32.89 
 
 
221 aa  73.2  0.000000000004  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal 
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  30.63 
 
 
209 aa  73.2  0.000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  32.56 
 
 
214 aa  73.2  0.000000000004  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0654  two component LuxR family transcriptional regulator  31.72 
 
 
256 aa  73.2  0.000000000004  Acidovorax citrulli AAC00-1  Bacteria  normal  0.639317  normal 
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  29.45 
 
 
209 aa  72.8  0.000000000005  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal 
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  32.89 
 
 
221 aa  73.2  0.000000000005  Pseudomonas putida GB-1  Bacteria  normal  normal  0.892266 
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  32.72 
 
 
267 aa  73.2  0.000000000005  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  30 
 
 
209 aa  73.2  0.000000000005  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_011901  Tgr7_0272  two component transcriptional regulator, LuxR family  28.97 
 
 
218 aa  72.4  0.000000000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.353555  n/a   
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  27.83 
 
 
209 aa  72.4  0.000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  29.68 
 
 
212 aa  72.8  0.000000000006  Opitutus terrae PB90-1  Bacteria  normal  normal  0.383896 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  28.34 
 
 
215 aa  72.4  0.000000000007  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
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