More than 300 homologs were found in PanDaTox collection
for query gene Mchl_4715 on replicon NC_011757
Organism: Methylobacterium chloromethanicum CM4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011757  Mchl_4715  two component transcriptional regulator, LuxR family  100 
 
 
253 aa  497  1e-140  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.525745 
 
 
-
 
NC_010172  Mext_4346  regulatory protein LuxR  100 
 
 
253 aa  497  1e-140  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4863  two component transcriptional regulator, LuxR family  89.73 
 
 
263 aa  453  1.0000000000000001e-126  Methylobacterium populi BJ001  Bacteria  normal  0.937693  normal  0.105083 
 
 
-
 
NC_010172  Mext_3578  regulatory protein LuxR  66.93 
 
 
253 aa  311  6.999999999999999e-84  Methylobacterium extorquens PA1  Bacteria  normal  0.0721369  normal 
 
 
-
 
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  32.95 
 
 
263 aa  117  9.999999999999999e-26  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_011894  Mnod_5613  transcriptional regulator, LuxR family  34.22 
 
 
238 aa  99  7e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6830  two component transcriptional regulator, LuxR family  37.13 
 
 
270 aa  99  7e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3764  two component LuxR family transcriptional regulator  34.93 
 
 
232 aa  98.6  9e-20  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4598  two component LuxR family transcriptional regulator  33.04 
 
 
236 aa  98.2  1e-19  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1627  two component LuxR family transcriptional regulator  33.04 
 
 
244 aa  96.3  4e-19  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0484719  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  32.6 
 
 
214 aa  92  9e-18  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6192  two component LuxR family transcriptional regulator  31.08 
 
 
231 aa  92  9e-18  Burkholderia phymatum STM815  Bacteria  normal  0.446565  normal  0.0472092 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  32.46 
 
 
221 aa  90.5  2e-17  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1633  two component LuxR family transcriptional regulator  32.75 
 
 
254 aa  90.5  2e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2258  two component LuxR family transcriptional regulator  34.5 
 
 
254 aa  89.4  6e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00245701 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  34.23 
 
 
209 aa  88.6  9e-17  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  30.22 
 
 
217 aa  87.8  1e-16  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  36.36 
 
 
217 aa  87.8  2e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  33.03 
 
 
223 aa  87.4  2e-16  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  31.14 
 
 
211 aa  86.3  4e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  37.91 
 
 
239 aa  86.7  4e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  34.18 
 
 
231 aa  86.3  5e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  29.28 
 
 
221 aa  84.7  0.000000000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  37.25 
 
 
219 aa  84.7  0.000000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_011662  Tmz1t_2630  two component transcriptional regulator, LuxR family  28.87 
 
 
243 aa  84.7  0.000000000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0654  two component LuxR family transcriptional regulator  31.56 
 
 
256 aa  85.1  0.000000000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.639317  normal 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  32.58 
 
 
217 aa  84.3  0.000000000000001  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  31.65 
 
 
218 aa  84.7  0.000000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  37.25 
 
 
219 aa  85.1  0.000000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  30.73 
 
 
224 aa  84.3  0.000000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  35.37 
 
 
215 aa  84  0.000000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_008321  Shewmr4_2223  transcriptional regulator NarL  34.9 
 
 
221 aa  84.3  0.000000000000002  Shewanella sp. MR-4  Bacteria  normal  0.134159  normal  0.207388 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  31.03 
 
 
226 aa  84.3  0.000000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  32.26 
 
 
219 aa  83.6  0.000000000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  30.97 
 
 
239 aa  83.6  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.377169 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  32.97 
 
 
227 aa  83.2  0.000000000000003  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  30.99 
 
 
219 aa  83.2  0.000000000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  35.37 
 
 
219 aa  83.2  0.000000000000004  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  32.9 
 
 
228 aa  83.2  0.000000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  34.35 
 
 
224 aa  82.8  0.000000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  30.08 
 
 
220 aa  82.8  0.000000000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2299  transcriptional regulator NarL  34.23 
 
 
221 aa  82.8  0.000000000000005  Shewanella sp. MR-7  Bacteria  normal  0.590018  normal  0.644367 
 
 
-
 
NC_012912  Dd1591_1848  transcriptional regulator NarL  35.81 
 
 
215 aa  82.4  0.000000000000006  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  33.77 
 
 
211 aa  82.4  0.000000000000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  30.59 
 
 
214 aa  82.4  0.000000000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  31.3 
 
 
225 aa  82  0.000000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  30.57 
 
 
216 aa  82  0.000000000000009  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  29.36 
 
 
225 aa  81.3  0.00000000000001  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  38.22 
 
 
227 aa  81.6  0.00000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  36.53 
 
 
250 aa  80.5  0.00000000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2359  two component transcriptional regulator, LuxR family  30.56 
 
 
247 aa  80.5  0.00000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0990205  decreased coverage  0.00133027 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  27.88 
 
 
222 aa  80.5  0.00000000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  39.46 
 
 
220 aa  80.1  0.00000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  31.67 
 
 
246 aa  80.5  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  29.41 
 
 
215 aa  79.7  0.00000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5598  two component transcriptional regulator, LuxR family  36.71 
 
 
287 aa  79.3  0.00000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738825  n/a   
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  35 
 
 
234 aa  79.3  0.00000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  30.97 
 
 
215 aa  79.3  0.00000000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_007947  Mfla_0445  two component LuxR family transcriptional regulator  36.55 
 
 
212 aa  79.3  0.00000000000006  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.0000000143028  normal  0.869605 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  30.36 
 
 
223 aa  79  0.00000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  33.33 
 
 
213 aa  79  0.00000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  30.43 
 
 
227 aa  78.6  0.00000000000008  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  36.67 
 
 
217 aa  78.6  0.00000000000009  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  26.72 
 
 
220 aa  78.6  0.00000000000009  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  29.65 
 
 
218 aa  78.6  0.0000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  30.32 
 
 
217 aa  78.2  0.0000000000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.332036 
 
 
-
 
NC_010625  Bphy_5911  two component LuxR family transcriptional regulator  35.92 
 
 
219 aa  78.6  0.0000000000001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1006  two component LuxR family transcriptional regulator  39.42 
 
 
219 aa  78.2  0.0000000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.91 
 
 
216 aa  78.2  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  30.98 
 
 
236 aa  77.8  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  33.99 
 
 
227 aa  78.2  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  30.4 
 
 
218 aa  77.4  0.0000000000002  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  30.53 
 
 
229 aa  77.4  0.0000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_010816  BLD_1769  putative response regulator  28.18 
 
 
231 aa  77.8  0.0000000000002  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  31.61 
 
 
218 aa  77.4  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  31.25 
 
 
224 aa  77.4  0.0000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  30.4 
 
 
218 aa  77.4  0.0000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  30.22 
 
 
213 aa  77.8  0.0000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  39.72 
 
 
208 aa  77.4  0.0000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  31.67 
 
 
208 aa  77.8  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  35.42 
 
 
216 aa  77.8  0.0000000000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  35.26 
 
 
243 aa  77.8  0.0000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  30.59 
 
 
213 aa  77.8  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  30.13 
 
 
220 aa  77.4  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  30.3 
 
 
221 aa  77  0.0000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  31.48 
 
 
257 aa  77  0.0000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  37.01 
 
 
230 aa  77  0.0000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  31.05 
 
 
209 aa  77  0.0000000000003  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal 
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  31.05 
 
 
209 aa  76.6  0.0000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  27.51 
 
 
242 aa  76.3  0.0000000000005  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_007951  Bxe_A1815  two component LuxR family transcriptional regulator  28.05 
 
 
213 aa  76.3  0.0000000000005  Burkholderia xenovorans LB400  Bacteria  normal  0.922696  normal  0.34679 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  31.36 
 
 
261 aa  76.3  0.0000000000005  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  28.96 
 
 
207 aa  76.3  0.0000000000005  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  28.96 
 
 
207 aa  76.3  0.0000000000005  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_011988  Avi_5384  two component response regulator  30.32 
 
 
216 aa  75.9  0.0000000000006  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  35.1 
 
 
231 aa  75.9  0.0000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  31.61 
 
 
250 aa  75.9  0.0000000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  30.73 
 
 
230 aa  75.9  0.0000000000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  33.77 
 
 
233 aa  75.5  0.0000000000007  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  30.07 
 
 
242 aa  75.5  0.0000000000007  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
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