| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2223 |
|---|
| Symbol | |
|---|
| ID | 4252796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2655427 |
|---|
| End bp | 2656092 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638118849 |
|---|
| Product | transcriptional regulator NarL |
|---|
| Protein accession | YP_734353 |
|---|
| Protein GI | 113970560 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.134159 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.207388 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTAATC AAGTTATCAC TGAGGAAGAT AAGGCAACAA TTTTACTTAT AGATGACCAT
CCCATGCTAC GTAACGGCGT TAAGCAATTA ATTGGTATGG CAGACAATTT ATGCATAGTT
GCTGAAGCCA GTTGCGGAAA GGATGGCATA ATATTGGCGA CTCAATTAGA CCCAGATTTA
ATTTTGCTTG ATCTAAATAT GCCAGAATTT AATGGCCTAG AAACCCTGAC TAAACTTAGA
GAGTGTGAAC TATCCAGTCG CATTATCGTA TTTACAGTCT CAAATTATGA GGGCGATATA
GTTAATGCTT TTAAATATGG AGCAGATGGT TATTTGTTGA AAGATATGGA GCCTGAAGAT
TTACTGCAAT CTATACAGCA AGCTGCTGCT GGGAAAATTG TATTAAGCGA TGCTATCGCT
CCGATTTTAG CGACAGGTTT ACGACATAAT CCCCCTGCAA CAAAACGAGA TATTGAATCC
CTGACAGCGA GAGAAAAAGA TATCATCAGA CTAGTTTCAC AAGGCTTGTC GAATAAAATG
ATTGCTCGTA AACTTATTAT TACGGAGGGA ACGGTAAAAG TTCATGTTAA GAATCTACTG
AAAAAGCTAT CATTCAAATC GAGAGTTGAA GCGACTGTAT GGATTCTTCA AGAAAATATA
TTTTAA
|
|---|
| Protein sequence | MCNQVITEED KATILLIDDH PMLRNGVKQL IGMADNLCIV AEASCGKDGI ILATQLDPDL
ILLDLNMPEF NGLETLTKLR ECELSSRIIV FTVSNYEGDI VNAFKYGADG YLLKDMEPED
LLQSIQQAAA GKIVLSDAIA PILATGLRHN PPATKRDIES LTAREKDIIR LVSQGLSNKM
IARKLIITEG TVKVHVKNLL KKLSFKSRVE ATVWILQENI F
|
|---|
| |