Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_1652 |
Symbol | |
ID | 5670054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 1972865 |
End bp | 1973518 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641240570 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001505996 |
Protein GI | 158313488 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.495895 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.106337 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGTCGTCG CCGACGACCA GGCGCTGGTC CGGGCCGGGT TCCGGATGAT CCTCACCGCC GACGGGATCG AGGTGGCCGC CGACGCCGCC GACGGCGCCC AGGCCGTCGA CGCTGTCCGG CGGACCCGCC CGGACGTCGT GCTCATGGAC ATCCGCATGC CGGTGATGGA CGGGCTGGAG GCCACCCGCC GGATCCTGAG CGGCACGACG GAGGCGCCCC GGGTGATCAT CCTGACGACG TTCGACGTCG ACCAGTACGT CTACGCGGCG CTGACCGCCG GGGCCAGCGG CTTCCTGCTC AAGGACGTCA GTCCCGAACA GCTGGTGGCC GCCGTCCGGC TGGTCCGCGC GGGGGACGCG CTGCTCGCGC CGACGATCAC CCGCCGGCTG GTGGAACGGT TCGCCTCACC GGAGCGGGTG GCCGCCGCGA CGCACCGCGA CCTGGCGACG CTCACCCCGC GGGAGCTCGA GGTCCTCCGG TTCCTCGCGC GTGGTCTGAG CAACGCCGAG CTGGCCGCAC GTTTCCAGCT CAGTGAGGCC ACGGTGAAGA CTCATGTGGC CCGGATCCTC GGCAAACTGC GGCTGCGGGA CCGGGTGCAG GCGGTCGTCG TCGCCTACGA GACGGGACTG GTCACCCCAG GGGGCCGCCT CTGA
|
Protein sequence | MVVADDQALV RAGFRMILTA DGIEVAADAA DGAQAVDAVR RTRPDVVLMD IRMPVMDGLE ATRRILSGTT EAPRVIILTT FDVDQYVYAA LTAGASGFLL KDVSPEQLVA AVRLVRAGDA LLAPTITRRL VERFASPERV AAATHRDLAT LTPRELEVLR FLARGLSNAE LAARFQLSEA TVKTHVARIL GKLRLRDRVQ AVVVAYETGL VTPGGRL
|
| |