Gene Franean1_1652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_1652 
Symbol 
ID5670054 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp1972865 
End bp1973518 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content73% 
IMG OID641240570 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001505996 
Protein GI158313488 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.495895 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.106337 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTCGTCG CCGACGACCA GGCGCTGGTC CGGGCCGGGT TCCGGATGAT CCTCACCGCC 
GACGGGATCG AGGTGGCCGC CGACGCCGCC GACGGCGCCC AGGCCGTCGA CGCTGTCCGG
CGGACCCGCC CGGACGTCGT GCTCATGGAC ATCCGCATGC CGGTGATGGA CGGGCTGGAG
GCCACCCGCC GGATCCTGAG CGGCACGACG GAGGCGCCCC GGGTGATCAT CCTGACGACG
TTCGACGTCG ACCAGTACGT CTACGCGGCG CTGACCGCCG GGGCCAGCGG CTTCCTGCTC
AAGGACGTCA GTCCCGAACA GCTGGTGGCC GCCGTCCGGC TGGTCCGCGC GGGGGACGCG
CTGCTCGCGC CGACGATCAC CCGCCGGCTG GTGGAACGGT TCGCCTCACC GGAGCGGGTG
GCCGCCGCGA CGCACCGCGA CCTGGCGACG CTCACCCCGC GGGAGCTCGA GGTCCTCCGG
TTCCTCGCGC GTGGTCTGAG CAACGCCGAG CTGGCCGCAC GTTTCCAGCT CAGTGAGGCC
ACGGTGAAGA CTCATGTGGC CCGGATCCTC GGCAAACTGC GGCTGCGGGA CCGGGTGCAG
GCGGTCGTCG TCGCCTACGA GACGGGACTG GTCACCCCAG GGGGCCGCCT CTGA
 
Protein sequence
MVVADDQALV RAGFRMILTA DGIEVAADAA DGAQAVDAVR RTRPDVVLMD IRMPVMDGLE 
ATRRILSGTT EAPRVIILTT FDVDQYVYAA LTAGASGFLL KDVSPEQLVA AVRLVRAGDA
LLAPTITRRL VERFASPERV AAATHRDLAT LTPRELEVLR FLARGLSNAE LAARFQLSEA
TVKTHVARIL GKLRLRDRVQ AVVVAYETGL VTPGGRL