More than 300 homologs were found in PanDaTox collection
for query gene Mext_3578 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010172  Mext_3578  regulatory protein LuxR  100 
 
 		 253 aa  504  9.999999999999999e-143  Methylobacterium extorquens PA1  Bacteria  normal  0.0721369  normal  1 
 
 
-
 
NC_011757  Mchl_4715  two component transcriptional regulator, LuxR family  66.93 
 
 		 253 aa  311  6.999999999999999e-84  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.525745 
 
 
-
 
NC_010172  Mext_4346  regulatory protein LuxR  66.93 
 
 		 253 aa  311  6.999999999999999e-84  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4863  two component transcriptional regulator, LuxR family  65.88 
 
 		 263 aa  308  5.9999999999999995e-83  Methylobacterium populi BJ001  Bacteria  normal  0.937693  normal  0.105083 
 
 
-
 
NC_011894  Mnod_6830  two component transcriptional regulator, LuxR family  35.68 
 
 		 270 aa  94.7  1e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_1627  two component LuxR family transcriptional regulator  31.72 
 
 		 244 aa  92.8  5e-18  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0484719  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  32.41 
 
 		 214 aa  90.5  2e-17  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_007948  Bpro_4598  two component LuxR family transcriptional regulator  30.43 
 
 		 236 aa  87  3e-16  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  29.39 
 
 		 263 aa  87  3e-16  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_009523  RoseRS_1633  two component LuxR family transcriptional regulator  33.92 
 
 		 254 aa  85.9  6e-16  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_5613  transcriptional regulator, LuxR family  33.18 
 
 		 238 aa  84.7  0.000000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  31.1 
 
 		 226 aa  83.6  0.000000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  28.57 
 
 		 218 aa  83.2  0.000000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  29.2 
 
 		 211 aa  83.2  0.000000000000004  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  31.36 
 
 		 224 aa  83.2  0.000000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  31.65 
 
 		 231 aa  82  0.000000000000008  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_3764  two component LuxR family transcriptional regulator  30.87 
 
 		 232 aa  81.6  0.00000000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_2258  two component LuxR family transcriptional regulator  29.78 
 
 		 254 aa  81.6  0.00000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  hitchhiker  0.00245701 
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  33.02 
 
 		 208 aa  81.3  0.00000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  28.57 
 
 		 207 aa  79.3  0.00000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  31.39 
 
 		 217 aa  79.7  0.00000000000005  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  31.84 
 
 		 209 aa  79.3  0.00000000000006  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  33.95 
 
 		 219 aa  79  0.00000000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.817999 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  33.95 
 
 		 219 aa  79  0.00000000000007  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1848  transcriptional regulator NarL  34.25 
 
 		 215 aa  78.6  0.00000000000009  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_4485  two component LuxR family transcriptional regulator  30.53 
 
 		 213 aa  77.8  0.0000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.310872  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  35.96 
 
 		 220 aa  77.4  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal  1 
 
 
-
 
NC_008340  Mlg_1006  two component LuxR family transcriptional regulator  35.76 
 
 		 219 aa  76.6  0.0000000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  28.17 
 
 		 219 aa  76.6  0.0000000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal  1 
 
 
-
 
NC_011662  Tmz1t_2630  two component transcriptional regulator, LuxR family  34.1 
 
 		 243 aa  76.3  0.0000000000004  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  31.68 
 
 		 221 aa  75.9  0.0000000000006  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  29.69 
 
 		 246 aa  75.9  0.0000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  31.92 
 
 		 214 aa  75.9  0.0000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.785726 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  30.77 
 
 		 226 aa  75.5  0.0000000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal  1 
 
 
-
 
NC_010625  Bphy_6192  two component LuxR family transcriptional regulator  27.95 
 
 		 231 aa  75.5  0.0000000000008  Burkholderia phymatum STM815  Bacteria  normal  0.446565  normal  0.0472092 
 
 
-
 
NC_013739  Cwoe_0615  two component transcriptional regulator, LuxR family  30.63 
 
 		 216 aa  75.5  0.0000000000009  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  32.2 
 
 		 225 aa  74.7  0.000000000001  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  30.18 
 
 		 213 aa  74.7  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  29.82 
 
 		 213 aa  73.9  0.000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  27.45 
 
 		 242 aa  74.3  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  28.1 
 
 		 242 aa  73.9  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011988  Avi_5384  two component response regulator  32 
 
 		 216 aa  73.6  0.000000000003  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  29.3 
 
 		 216 aa  73.6  0.000000000003  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_007951  Bxe_A1815  two component LuxR family transcriptional regulator  27.88 
 
 		 213 aa  73.2  0.000000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.922696  normal  0.34679 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  28.44 
 
 		 220 aa  73.9  0.000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  28.12 
 
 		 222 aa  73.6  0.000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.764026 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  29.18 
 
 		 220 aa  73.2  0.000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  31.35 
 
 		 227 aa  72.8  0.000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  28.33 
 
 		 220 aa  73.2  0.000000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  29.46 
 
 		 218 aa  72.8  0.000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  35.48 
 
 		 218 aa  72.8  0.000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  28.69 
 
 		 227 aa  72.8  0.000000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  28.66 
 
 		 228 aa  72.8  0.000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  31.87 
 
 		 218 aa  72.8  0.000000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  29.15 
 
 		 214 aa  72.4  0.000000000006  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  34.52 
 
 		 221 aa  72.4  0.000000000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_2359  two component transcriptional regulator, LuxR family  31.14 
 
 		 247 aa  72.4  0.000000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0990205  decreased coverage  0.00133027 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  29.22 
 
 		 236 aa  72  0.000000000008  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  29.13 
 
 		 211 aa  72  0.000000000009  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_2223  transcriptional regulator NarL  31.61 
 
 		 221 aa  71.2  0.00000000001  Shewanella sp. MR-4  Bacteria  normal  0.134159  normal  0.207388 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  32.96 
 
 		 222 aa  71.2  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  29.39 
 
 		 209 aa  71.2  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  29.39 
 
 		 209 aa  71.2  0.00000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  29.39 
 
 		 209 aa  71.2  0.00000000002  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  32.28 
 
 		 217 aa  71.2  0.00000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  29.39 
 
 		 209 aa  71.2  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  35.8 
 
 		 234 aa  70.9  0.00000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal  1 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  29.02 
 
 		 222 aa  70.9  0.00000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  28.81 
 
 		 257 aa  70.9  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  29.88 
 
 		 213 aa  70.9  0.00000000002  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  30.3 
 
 		 225 aa  70.9  0.00000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013159  Svir_01100  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  29.65 
 
 		 214 aa  70.9  0.00000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  29.39 
 
 		 209 aa  71.2  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  34.19 
 
 		 218 aa  70.5  0.00000000003  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  27.93 
 
 		 239 aa  70.5  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.377169 
 
 
-
 
NC_007947  Mfla_0445  two component LuxR family transcriptional regulator  34.72 
 
 		 212 aa  70.1  0.00000000003  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.0000000143028  normal  0.869605 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  34.19 
 
 		 218 aa  70.5  0.00000000003  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  29.41 
 
 		 223 aa  70.1  0.00000000003  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal  1 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  33.15 
 
 		 220 aa  70.1  0.00000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  34.97 
 
 		 216 aa  69.7  0.00000000004  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_2299  transcriptional regulator NarL  30.97 
 
 		 221 aa  69.7  0.00000000004  Shewanella sp. MR-7  Bacteria  normal  0.590018  normal  0.644367 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  29.26 
 
 		 218 aa  69.7  0.00000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  28.7 
 
 		 213 aa  69.7  0.00000000004  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.74 
 
 		 225 aa  69.7  0.00000000004  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  31.13 
 
 		 217 aa  70.1  0.00000000004  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_012792  Vapar_5403  transcriptional regulator, LuxR family  31.08 
 
 		 206 aa  69.7  0.00000000005  Variovorax paradoxus S110  Bacteria  normal  0.497351  n/a   
 
 
-
 
NC_009921  Franean1_1971  two component LuxR family transcriptional regulator  31.93 
 
 		 216 aa  69.3  0.00000000005  Frankia sp. EAN1pec  Bacteria  normal  0.356635  normal  0.773651 
 
 
-
 
NC_013595  Sros_6161  response regulator receiver protein  34.69 
 
 		 221 aa  68.9  0.00000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  0.902987  decreased coverage  0.000109123 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  30.63 
 
 		 213 aa  69.3  0.00000000006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_1151  two component LuxR family transcriptional regulator  31.25 
 
 		 225 aa  69.3  0.00000000006  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  35.2 
 
 		 230 aa  69.3  0.00000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  26.13 
 
 		 219 aa  68.9  0.00000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  28.95 
 
 		 209 aa  68.9  0.00000000007  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_008577  Shewana3_1152  two component LuxR family transcriptional regulator  31.25 
 
 		 225 aa  68.9  0.00000000007  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  30.63 
 
 		 219 aa  68.9  0.00000000007  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_5598  two component transcriptional regulator, LuxR family  31.58 
 
 		 287 aa  68.9  0.00000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738825  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  27.19 
 
 		 224 aa  68.9  0.00000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_6094  two component transcriptional regulator, LuxR family  32.14 
 
 		 235 aa  68.9  0.00000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.634688  normal  0.121163 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  32.1 
 
 		 218 aa  68.9  0.00000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  33.33 
 
 		 220 aa  68.9  0.00000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.495874 
 
 
-
 
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