More than 300 homologs were found in PanDaTox collection
for query gene Mpop_4863 on replicon NC_010725
Organism: Methylobacterium populi BJ001



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010725  Mpop_4863  two component transcriptional regulator, LuxR family  100 
 
 		 263 aa  513  1e-144  Methylobacterium populi BJ001  Bacteria  normal  0.937693  normal  0.105083 
 
 
-
 
NC_010172  Mext_4346  regulatory protein LuxR  89.73 
 
 		 253 aa  453  1.0000000000000001e-126  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_4715  two component transcriptional regulator, LuxR family  89.73 
 
 		 253 aa  453  1.0000000000000001e-126  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.525745 
 
 
-
 
NC_010172  Mext_3578  regulatory protein LuxR  65.88 
 
 		 253 aa  308  6.999999999999999e-83  Methylobacterium extorquens PA1  Bacteria  normal  0.0721369  normal  1 
 
 
-
 
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  34.46 
 
 		 263 aa  120  1.9999999999999998e-26  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_011894  Mnod_6830  two component transcriptional regulator, LuxR family  37.76 
 
 		 270 aa  106  4e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_5613  transcriptional regulator, LuxR family  35.37 
 
 		 238 aa  100  2e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_1627  two component LuxR family transcriptional regulator  34.51 
 
 		 244 aa  97.1  3e-19  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0484719  n/a   
 
 
-
 
NC_007948  Bpro_4598  two component LuxR family transcriptional regulator  33.19 
 
 		 236 aa  95.1  9e-19  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  35.09 
 
 		 214 aa  94.7  1e-18  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_3764  two component LuxR family transcriptional regulator  35.19 
 
 		 232 aa  94.7  1e-18  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  34.12 
 
 		 217 aa  91.7  1e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  34.62 
 
 		 221 aa  92  1e-17  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  30.04 
 
 		 226 aa  90.9  2e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  38.1 
 
 		 219 aa  90.9  2e-17  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  35.14 
 
 		 209 aa  90.1  3e-17  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  35.98 
 
 		 219 aa  89.7  4e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.817999 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  35.98 
 
 		 219 aa  89.7  4e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  31.17 
 
 		 211 aa  89  7e-17  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_1633  two component LuxR family transcriptional regulator  31.88 
 
 		 254 aa  89  8e-17  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_2258  two component LuxR family transcriptional regulator  33.19 
 
 		 254 aa  87  2e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  hitchhiker  0.00245701 
 
 
-
 
NC_011662  Tmz1t_2630  two component transcriptional regulator, LuxR family  29.41 
 
 		 243 aa  87.8  2e-16  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  33.9 
 
 		 227 aa  87  3e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  33.63 
 
 		 217 aa  87  3e-16  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_2223  transcriptional regulator NarL  35.57 
 
 		 221 aa  86.3  5e-16  Shewanella sp. MR-4  Bacteria  normal  0.134159  normal  0.207388 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  36.05 
 
 		 215 aa  86.3  5e-16  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.132796 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  29.78 
 
 		 221 aa  85.9  6e-16  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_008752  Aave_0654  two component LuxR family transcriptional regulator  34.66 
 
 		 256 aa  85.9  6e-16  Acidovorax citrulli AAC00-1  Bacteria  normal  0.639317  normal  1 
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  28.94 
 
 		 218 aa  85.5  9e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_2299  transcriptional regulator NarL  34.9 
 
 		 221 aa  84.7  0.000000000000001  Shewanella sp. MR-7  Bacteria  normal  0.590018  normal  0.644367 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  32.31 
 
 		 219 aa  84.7  0.000000000000001  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  29.34 
 
 		 236 aa  84.3  0.000000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  32.61 
 
 		 214 aa  84  0.000000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010625  Bphy_6192  two component LuxR family transcriptional regulator  30.74 
 
 		 231 aa  84.3  0.000000000000002  Burkholderia phymatum STM815  Bacteria  normal  0.446565  normal  0.0472092 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  33.91 
 
 		 220 aa  84.3  0.000000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1848  transcriptional regulator NarL  36.99 
 
 		 215 aa  84  0.000000000000002  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  29.39 
 
 		 217 aa  84  0.000000000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  33.96 
 
 		 231 aa  83.6  0.000000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  30.93 
 
 		 239 aa  83.2  0.000000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.377169 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  35.06 
 
 		 211 aa  83.2  0.000000000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0337978 
 
 
-
 
NC_008340  Mlg_1006  two component LuxR family transcriptional regulator  35.32 
 
 		 219 aa  82.8  0.000000000000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  34.29 
 
 		 246 aa  82.8  0.000000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  32.44 
 
 		 209 aa  82.4  0.000000000000007  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal  1 
 
 
-
 
NC_007947  Mfla_0445  two component LuxR family transcriptional regulator  37.93 
 
 		 212 aa  82  0.000000000000009  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.0000000143028  normal  0.869605 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  36.18 
 
 		 239 aa  81.6  0.00000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  34.48 
 
 		 223 aa  81.3  0.00000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal  1 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  31.33 
 
 		 213 aa  81.6  0.00000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  32 
 
 		 223 aa  81.6  0.00000000000001  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal  1 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  30.9 
 
 		 218 aa  81.3  0.00000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  32.17 
 
 		 227 aa  80.5  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  30.94 
 
 		 219 aa  81.3  0.00000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal  1 
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  32.29 
 
 		 209 aa  81.3  0.00000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal  1 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  27.54 
 
 		 222 aa  80.9  0.00000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_0792  two component LuxR family transcriptional regulator  30.97 
 
 		 209 aa  80.5  0.00000000000002  Shewanella baltica OS155  Bacteria  hitchhiker  0.000000151034  n/a   
 
 
-
 
NC_009997  Sbal195_3836  two component LuxR family transcriptional regulator  30.97 
 
 		 209 aa  80.5  0.00000000000002  Shewanella baltica OS195  Bacteria  hitchhiker  0.00000136397  normal  0.0231387 
 
 
-
 
NC_009665  Shew185_3713  two component LuxR family transcriptional regulator  30.97 
 
 		 209 aa  80.5  0.00000000000002  Shewanella baltica OS185  Bacteria  hitchhiker  0.000000000161759  n/a   
 
 
-
 
NC_011663  Sbal223_3654  two component transcriptional regulator, LuxR family  31.11 
 
 		 209 aa  80.1  0.00000000000003  Shewanella baltica OS223  Bacteria  unclonable  0.000000000464283  hitchhiker  0.00000781977 
 
 
-
 
NC_009831  Ssed_0929  two component LuxR family transcriptional regulator  32.74 
 
 		 209 aa  79.7  0.00000000000004  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000567962  normal  1 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  30.04 
 
 		 224 aa  80.1  0.00000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011988  Avi_5384  two component response regulator  30.74 
 
 		 216 aa  80.1  0.00000000000004  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  27.12 
 
 		 242 aa  79.7  0.00000000000004  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_5598  two component transcriptional regulator, LuxR family  36.71 
 
 		 287 aa  80.1  0.00000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738825  n/a   
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  40.43 
 
 		 208 aa  79.7  0.00000000000005  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  27.54 
 
 		 242 aa  79.7  0.00000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  31.08 
 
 		 216 aa  79.3  0.00000000000006  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  38.82 
 
 		 220 aa  79  0.00000000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal  1 
 
 
-
 
NC_004347  SO_3982  DNA-binding nitrate/nitrite response regulator  31.14 
 
 		 209 aa  78.2  0.0000000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  33.12 
 
 		 228 aa  78.2  0.0000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  30.77 
 
 		 227 aa  78.6  0.0000000000001  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_011831  Cagg_2359  two component transcriptional regulator, LuxR family  30.56 
 
 		 247 aa  78.2  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0990205  decreased coverage  0.00133027 
 
 
-
 
NC_010625  Bphy_5911  two component LuxR family transcriptional regulator  35.1 
 
 		 219 aa  78.2  0.0000000000001  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  36.67 
 
 		 217 aa  78.2  0.0000000000001  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  33.12 
 
 		 225 aa  78.6  0.0000000000001  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  30.26 
 
 		 220 aa  78.2  0.0000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  30.57 
 
 		 216 aa  77.4  0.0000000000002  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  30.57 
 
 		 227 aa  77.4  0.0000000000002  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  33.71 
 
 		 231 aa  77.4  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  37.24 
 
 		 209 aa  77.8  0.0000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  35.9 
 
 		 234 aa  77.4  0.0000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  28.25 
 
 		 207 aa  76.6  0.0000000000003  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_007204  Psyc_0602  nitrate/nitrite response regulator  31.53 
 
 		 219 aa  77  0.0000000000003  Psychrobacter arcticus 273-4  Bacteria  normal  0.790372  normal  1 
 
 
-
 
NC_008321  Shewmr4_0657  two component LuxR family transcriptional regulator  31.72 
 
 		 209 aa  77  0.0000000000003  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000493749  normal  0.229808 
 
 
-
 
NC_008322  Shewmr7_3365  two component LuxR family transcriptional regulator  31.72 
 
 		 209 aa  77  0.0000000000003  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000651556  normal  0.0242167 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  31.84 
 
 		 213 aa  77  0.0000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.0500394 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  35.93 
 
 		 250 aa  77  0.0000000000003  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_0656  two component LuxR family transcriptional regulator  31.72 
 
 		 209 aa  77  0.0000000000003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000830399  normal  0.140804 
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  30.18 
 
 		 209 aa  77  0.0000000000003  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  34.32 
 
 		 225 aa  77  0.0000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  35.1 
 
 		 234 aa  77  0.0000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal  1 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  36.18 
 
 		 218 aa  76.6  0.0000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  34.42 
 
 		 233 aa  76.6  0.0000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  33.89 
 
 		 241 aa  76.6  0.0000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  29.52 
 
 		 218 aa  76.6  0.0000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  31.74 
 
 		 215 aa  76.3  0.0000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_008700  Sama_0646  response regulator receiver protein  32.14 
 
 		 209 aa  76.3  0.0000000000005  Shewanella amazonensis SB2B  Bacteria  normal  0.0492071  normal  1 
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  34.34 
 
 		 243 aa  76.3  0.0000000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  31 
 
 		 209 aa  75.9  0.0000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  30.86 
 
 		 257 aa  75.9  0.0000000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  37.41 
 
 		 230 aa  75.9  0.0000000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  30.66 
 
 		 250 aa  75.5  0.0000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
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