More than 300 homologs were found in PanDaTox collection
for query gene Mnod_5598 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_5598  two component transcriptional regulator, LuxR family  100 
 
 
287 aa  580  1e-164  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738825  n/a   
 
 
-
 
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  34.36 
 
 
263 aa  129  7.000000000000001e-29  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  32.73 
 
 
226 aa  85.9  7e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  29.11 
 
 
246 aa  84.3  0.000000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_011894  Mnod_6830  two component transcriptional regulator, LuxR family  30.51 
 
 
270 aa  84  0.000000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4598  two component LuxR family transcriptional regulator  29.49 
 
 
236 aa  82.4  0.000000000000007  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1627  two component LuxR family transcriptional regulator  27.01 
 
 
244 aa  82  0.00000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0484719  n/a   
 
 
-
 
NC_010725  Mpop_4863  two component transcriptional regulator, LuxR family  32.02 
 
 
263 aa  81.6  0.00000000000001  Methylobacterium populi BJ001  Bacteria  normal  0.937693  normal  0.105083 
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  32.24 
 
 
209 aa  80.5  0.00000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  27.78 
 
 
250 aa  80.1  0.00000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_011757  Mchl_4715  two component transcriptional regulator, LuxR family  36.71 
 
 
253 aa  79.7  0.00000000000005  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.525745 
 
 
-
 
NC_010172  Mext_4346  regulatory protein LuxR  36.71 
 
 
253 aa  79.7  0.00000000000005  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5613  transcriptional regulator, LuxR family  29.41 
 
 
238 aa  78.6  0.0000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  28.37 
 
 
231 aa  77.4  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  28.65 
 
 
223 aa  76.3  0.0000000000006  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  28.24 
 
 
224 aa  75.9  0.0000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_3654  two component transcriptional regulator, LuxR family  29.05 
 
 
209 aa  75.1  0.000000000001  Shewanella baltica OS223  Bacteria  unclonable  0.000000000464283  hitchhiker  0.00000781977 
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  29.17 
 
 
209 aa  75.1  0.000000000001  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_009972  Haur_1104  two component LuxR family transcriptional regulator  33.55 
 
 
218 aa  74.7  0.000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.348687  n/a   
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  27.71 
 
 
210 aa  74.7  0.000000000002  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  27.71 
 
 
210 aa  74.3  0.000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  28.81 
 
 
215 aa  73.9  0.000000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3578  regulatory protein LuxR  29.46 
 
 
253 aa  73.9  0.000000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.0721369  normal 
 
 
-
 
NC_009092  Shew_0842  two component LuxR family transcriptional regulator  29.52 
 
 
209 aa  73.9  0.000000000003  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00000336278  normal 
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  26.82 
 
 
222 aa  73.2  0.000000000004  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3836  two component LuxR family transcriptional regulator  29.31 
 
 
209 aa  72.8  0.000000000007  Shewanella baltica OS195  Bacteria  hitchhiker  0.00000136397  normal  0.0231387 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  28.25 
 
 
215 aa  72.8  0.000000000007  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3713  two component LuxR family transcriptional regulator  29.31 
 
 
209 aa  72.8  0.000000000007  Shewanella baltica OS185  Bacteria  hitchhiker  0.000000000161759  n/a   
 
 
-
 
NC_009052  Sbal_0792  two component LuxR family transcriptional regulator  29.31 
 
 
209 aa  72.8  0.000000000007  Shewanella baltica OS155  Bacteria  hitchhiker  0.000000151034  n/a   
 
 
-
 
NC_009438  Sputcn32_0683  two component LuxR family transcriptional regulator  28.92 
 
 
209 aa  72.4  0.000000000008  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000388278  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  28.25 
 
 
215 aa  72.4  0.000000000008  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  28.25 
 
 
215 aa  72  0.00000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  28.25 
 
 
215 aa  72  0.00000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  28.25 
 
 
215 aa  72  0.00000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  28.25 
 
 
215 aa  72  0.00000000001  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  28.25 
 
 
215 aa  72  0.00000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  28.25 
 
 
215 aa  72  0.00000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  27.11 
 
 
210 aa  71.6  0.00000000001  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  27.11 
 
 
210 aa  70.9  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  27.11 
 
 
210 aa  71.2  0.00000000002  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  27.11 
 
 
210 aa  71.2  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  27.11 
 
 
210 aa  71.2  0.00000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_006274  BCZK1321  response regulator  27.63 
 
 
210 aa  71.2  0.00000000002  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  31.53 
 
 
227 aa  71.2  0.00000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  27.11 
 
 
210 aa  71.2  0.00000000002  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  27.11 
 
 
210 aa  71.2  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  26.36 
 
 
222 aa  71.2  0.00000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  25.11 
 
 
213 aa  71.6  0.00000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0620  two component transcriptional regulator, LuxR family protein  28.5 
 
 
209 aa  70.9  0.00000000002  Shewanella frigidimarina NCIMB 400  Bacteria  unclonable  0.000000000275655  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  24.54 
 
 
213 aa  71.2  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  27.11 
 
 
210 aa  71.2  0.00000000002  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  26.36 
 
 
219 aa  71.2  0.00000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  28.48 
 
 
221 aa  70.9  0.00000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_008321  Shewmr4_0657  two component LuxR family transcriptional regulator  30.18 
 
 
209 aa  70.9  0.00000000003  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000493749  normal  0.229808 
 
 
-
 
NC_008322  Shewmr7_3365  two component LuxR family transcriptional regulator  30.18 
 
 
209 aa  70.9  0.00000000003  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000651556  normal  0.0242167 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  27.85 
 
 
217 aa  70.5  0.00000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_008577  Shewana3_0656  two component LuxR family transcriptional regulator  30.18 
 
 
209 aa  70.9  0.00000000003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000830399  normal  0.140804 
 
 
-
 
NC_011831  Cagg_0020  two component transcriptional regulator, LuxR family  28.63 
 
 
229 aa  70.1  0.00000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  29.59 
 
 
236 aa  70.1  0.00000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  24.66 
 
 
215 aa  70.1  0.00000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  27.91 
 
 
221 aa  69.7  0.00000000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0646  response regulator receiver protein  28.31 
 
 
209 aa  69.7  0.00000000005  Shewanella amazonensis SB2B  Bacteria  normal  0.0492071  normal 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  25.69 
 
 
218 aa  69.7  0.00000000006  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_009972  Haur_4485  two component LuxR family transcriptional regulator  29.81 
 
 
213 aa  69.3  0.00000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.310872  n/a   
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  25.58 
 
 
241 aa  69.3  0.00000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  26.55 
 
 
242 aa  69.7  0.00000000006  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  25.69 
 
 
218 aa  69.7  0.00000000006  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_008025  Dgeo_1708  two component LuxR family transcriptional regulator  28.74 
 
 
221 aa  69.3  0.00000000007  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.685529 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  27.07 
 
 
242 aa  68.9  0.0000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  26.6 
 
 
257 aa  68.6  0.0000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_008532  STER_1387  DNA-binding response regulator  24.89 
 
 
214 aa  68.2  0.0000000001  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00141106  n/a   
 
 
-
 
NC_002936  DET0432  LuxR family DNA-binding response regulator  25.71 
 
 
232 aa  67.8  0.0000000002  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.00543066  n/a   
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  28.74 
 
 
209 aa  68.2  0.0000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  28.5 
 
 
225 aa  67.8  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  23.96 
 
 
224 aa  67.8  0.0000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  30.5 
 
 
275 aa  67.4  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal 
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  24.15 
 
 
224 aa  67.4  0.0000000003  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  24.15 
 
 
224 aa  67.4  0.0000000003  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1410  two component transcriptional regulator, LuxR family  27.27 
 
 
222 aa  67.4  0.0000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.46664  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  27.35 
 
 
252 aa  67  0.0000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_011662  Tmz1t_2630  two component transcriptional regulator, LuxR family  25.21 
 
 
243 aa  67  0.0000000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  27.78 
 
 
220 aa  66.6  0.0000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  26.92 
 
 
207 aa  66.2  0.0000000005  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  25.48 
 
 
227 aa  66.6  0.0000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  26.05 
 
 
230 aa  66.2  0.0000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_004347  SO_3982  DNA-binding nitrate/nitrite response regulator  28.92 
 
 
209 aa  66.2  0.0000000006  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  24.32 
 
 
218 aa  66.2  0.0000000006  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011989  Avi_0584  two component response regulator  28.64 
 
 
215 aa  66.2  0.0000000006  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  26.36 
 
 
221 aa  65.9  0.0000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  24.76 
 
 
224 aa  65.9  0.0000000007  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  28.67 
 
 
223 aa  65.9  0.0000000008  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  28.78 
 
 
224 aa  65.9  0.0000000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_004116  SAG0322  DNA-binding response regulator  22.73 
 
 
213 aa  65.1  0.000000001  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  27.14 
 
 
216 aa  65.5  0.000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  26.09 
 
 
215 aa  65.1  0.000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  30.73 
 
 
208 aa  65.1  0.000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  34.75 
 
 
214 aa  65.5  0.000000001  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  26.79 
 
 
212 aa  65.1  0.000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  30.67 
 
 
224 aa  65.1  0.000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  25.93 
 
 
225 aa  65.1  0.000000001  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
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