More than 300 homologs were found in PanDaTox collection
for query gene Pnap_3764 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_3764  two component LuxR family transcriptional regulator  100 
 
 
232 aa  456  1e-127  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4598  two component LuxR family transcriptional regulator  74.15 
 
 
236 aa  333  2e-90  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6192  two component LuxR family transcriptional regulator  57.87 
 
 
231 aa  250  1e-65  Burkholderia phymatum STM815  Bacteria  normal  0.446565  normal  0.0472092 
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  61.23 
 
 
223 aa  248  6e-65  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal 
 
 
-
 
NC_011992  Dtpsy_0424  two component transcriptional regulator, LuxR family  58.67 
 
 
223 aa  228  8e-59  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0433  two component LuxR family transcriptional regulator  58.67 
 
 
223 aa  228  8e-59  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0654  two component LuxR family transcriptional regulator  57.2 
 
 
256 aa  224  1e-57  Acidovorax citrulli AAC00-1  Bacteria  normal  0.639317  normal 
 
 
-
 
NC_008825  Mpe_A1686  two component LuxR family transcriptional regulator  56.19 
 
 
240 aa  222  4e-57  Methylibium petroleiphilum PM1  Bacteria  normal  0.173725  normal  0.554277 
 
 
-
 
NC_007908  Rfer_1869  two component LuxR family transcriptional regulator  57.46 
 
 
231 aa  222  4.9999999999999996e-57  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  47.16 
 
 
221 aa  197  1.0000000000000001e-49  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_011662  Tmz1t_2630  two component transcriptional regulator, LuxR family  50.43 
 
 
243 aa  196  4.0000000000000005e-49  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  44.3 
 
 
217 aa  177  2e-43  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  47.37 
 
 
236 aa  176  3e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  45.74 
 
 
218 aa  173  1.9999999999999998e-42  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  45.74 
 
 
218 aa  173  1.9999999999999998e-42  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  44.84 
 
 
222 aa  171  6.999999999999999e-42  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  44.84 
 
 
217 aa  170  2e-41  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.332036 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  44.84 
 
 
242 aa  169  4e-41  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  41.88 
 
 
237 aa  169  5e-41  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  41.63 
 
 
221 aa  168  7e-41  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  43.05 
 
 
234 aa  166  2e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  41.85 
 
 
241 aa  166  2e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  41.33 
 
 
231 aa  166  2.9999999999999998e-40  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  41.45 
 
 
237 aa  165  5e-40  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  42.11 
 
 
219 aa  165  5.9999999999999996e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  42.11 
 
 
219 aa  164  9e-40  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  39.91 
 
 
253 aa  164  1.0000000000000001e-39  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  43.35 
 
 
238 aa  160  1e-38  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  41.67 
 
 
234 aa  160  2e-38  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  41.63 
 
 
303 aa  159  3e-38  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  41.92 
 
 
225 aa  159  3e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  43.48 
 
 
250 aa  159  3e-38  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  39.37 
 
 
219 aa  159  4e-38  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  44.14 
 
 
214 aa  157  1e-37  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  41.63 
 
 
219 aa  156  3e-37  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  39.82 
 
 
213 aa  154  1e-36  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_006348  BMA1736  DNA-binding response regulator NarL  39.91 
 
 
233 aa  152  5.9999999999999996e-36  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2764  DNA-binding response regulator NarL  39.91 
 
 
233 aa  152  5.9999999999999996e-36  Burkholderia pseudomallei 1710b  Bacteria  normal  0.922757  n/a   
 
 
-
 
NC_007947  Mfla_0445  two component LuxR family transcriptional regulator  38.6 
 
 
212 aa  152  5.9999999999999996e-36  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.0000000143028  normal  0.869605 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  39.65 
 
 
217 aa  152  5.9999999999999996e-36  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2246  DNA-binding response regulator NarL  39.91 
 
 
233 aa  152  5.9999999999999996e-36  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3072  DNA-binding response regulator NarL  39.91 
 
 
233 aa  152  5.9999999999999996e-36  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2630  nitrate/nitrite response regulator protein NarL  39.91 
 
 
233 aa  152  5.9999999999999996e-36  Burkholderia pseudomallei 668  Bacteria  normal  0.14617  n/a   
 
 
-
 
NC_009076  BURPS1106A_2686  nitrate/nitrite response regulator protein NarL  39.91 
 
 
233 aa  152  5.9999999999999996e-36  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1519  DNA-binding response regulator NarL  39.91 
 
 
233 aa  152  5.9999999999999996e-36  Burkholderia mallei NCTC 10247  Bacteria  normal  0.281442  n/a   
 
 
-
 
NC_007651  BTH_I1849  DNA-binding response regulator NarL  39.47 
 
 
233 aa  149  4e-35  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6525  two component transcriptional regulator, LuxR family  38.43 
 
 
216 aa  148  6e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2582  LuxR response regulator receiver  39.65 
 
 
233 aa  147  1.0000000000000001e-34  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0602  nitrate/nitrite response regulator  40.18 
 
 
219 aa  146  2.0000000000000003e-34  Psychrobacter arcticus 273-4  Bacteria  normal  0.790372  normal 
 
 
-
 
NC_010625  Bphy_5911  two component LuxR family transcriptional regulator  40.27 
 
 
219 aa  147  2.0000000000000003e-34  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  39.46 
 
 
213 aa  147  2.0000000000000003e-34  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  38.57 
 
 
213 aa  145  5e-34  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  38.64 
 
 
215 aa  144  9e-34  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_014165  Tbis_0649  LuxR family two component transcriptional regulator  38.1 
 
 
212 aa  144  9e-34  Thermobispora bispora DSM 43833  Bacteria  normal  0.93281  normal  0.368826 
 
 
-
 
NC_013235  Namu_1255  two component transcriptional regulator, LuxR family  37.39 
 
 
219 aa  142  5e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  0.490147  normal  0.40644 
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  38.57 
 
 
209 aa  141  7e-33  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  38.57 
 
 
209 aa  141  7e-33  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  38.57 
 
 
209 aa  141  7e-33  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  38.57 
 
 
209 aa  141  7e-33  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  38.57 
 
 
209 aa  142  7e-33  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  38.57 
 
 
209 aa  141  7e-33  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_009620  Smed_4344  two component LuxR family transcriptional regulator  39.37 
 
 
219 aa  141  9e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.218307 
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  37.67 
 
 
213 aa  140  9.999999999999999e-33  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000185138 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  37.72 
 
 
213 aa  140  1.9999999999999998e-32  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  39.73 
 
 
224 aa  139  3e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  40.34 
 
 
217 aa  139  3e-32  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  39.21 
 
 
227 aa  139  4.999999999999999e-32  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2900  transcriptional regulator NarL  39.55 
 
 
216 aa  138  6e-32  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  37.73 
 
 
216 aa  138  7e-32  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  39.46 
 
 
214 aa  137  1e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  38.57 
 
 
211 aa  137  1e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  40 
 
 
217 aa  137  1e-31  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  37.05 
 
 
217 aa  137  1e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  37.22 
 
 
226 aa  137  1e-31  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  38.57 
 
 
215 aa  136  2e-31  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  33.04 
 
 
222 aa  136  2e-31  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_04820  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  35.37 
 
 
229 aa  136  2e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.465009  normal 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  37.67 
 
 
215 aa  137  2e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  40.36 
 
 
229 aa  136  2e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3824  response regulator receiver  35.96 
 
 
228 aa  137  2e-31  Salinispora tropica CNB-440  Bacteria  normal  0.206519  normal 
 
 
-
 
NC_014211  Ndas_5233  two component transcriptional regulator, LuxR family  37.44 
 
 
223 aa  136  3.0000000000000003e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.114456  hitchhiker  0.000738291 
 
 
-
 
NC_007777  Francci3_2258  two component LuxR family transcriptional regulator  37.83 
 
 
224 aa  136  3.0000000000000003e-31  Frankia sp. CcI3  Bacteria  normal  0.124896  normal  0.0124728 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  37.17 
 
 
216 aa  136  3.0000000000000003e-31  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  38.57 
 
 
215 aa  135  4e-31  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  37.12 
 
 
211 aa  135  4e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_013595  Sros_1229  response regulator receiver protein  36.8 
 
 
212 aa  135  4e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.643884  hitchhiker  0.00799583 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  38.57 
 
 
215 aa  135  5e-31  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  38.57 
 
 
215 aa  135  5e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  38.57 
 
 
215 aa  135  5e-31  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  38.57 
 
 
215 aa  135  5e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  38.57 
 
 
215 aa  135  5e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  38.57 
 
 
215 aa  135  6.0000000000000005e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  37.89 
 
 
211 aa  135  6.0000000000000005e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  38.16 
 
 
222 aa  135  6.0000000000000005e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  38.12 
 
 
215 aa  135  6.0000000000000005e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  39.91 
 
 
221 aa  134  9e-31  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  39.29 
 
 
222 aa  134  9.999999999999999e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_010159  YpAngola_A2794  nitrate/nitrite response regulator protein NarP  38.05 
 
 
209 aa  134  9.999999999999999e-31  Yersinia pestis Angola  Bacteria  normal  normal  0.0858473 
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  36.84 
 
 
211 aa  134  9.999999999999999e-31  Frankia sp. EAN1pec  Bacteria  normal  normal  0.265588 
 
 
-
 
NC_010465  YPK_1384  two component LuxR family transcriptional regulator  38.05 
 
 
209 aa  134  9.999999999999999e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
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