More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_1379 on replicon NC_010681
Organism: Burkholderia phytofirmans PsJN



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010681  Bphyt_1379  two component transcriptional regulator, LuxR family  100 
 
 
292 aa  585  1e-166  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0210202  hitchhiker  0.00446461 
 
 
-
 
NC_007951  Bxe_A3176  two component LuxR family transcriptional regulator  90.75 
 
 
292 aa  506  9.999999999999999e-143  Burkholderia xenovorans LB400  Bacteria  normal  0.0570221  normal  0.472976 
 
 
-
 
NC_010622  Bphy_1975  two component LuxR family transcriptional regulator  66.79 
 
 
293 aa  361  7.0000000000000005e-99  Burkholderia phymatum STM815  Bacteria  normal  0.0150451  normal 
 
 
-
 
NC_007651  BTH_I1094  DNA-binding response regulator  58.33 
 
 
279 aa  286  4e-76  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000582737  n/a   
 
 
-
 
NC_009074  BURPS668_1325  putative DNA-binding response regulator  57.61 
 
 
279 aa  283  3.0000000000000004e-75  Burkholderia pseudomallei 668  Bacteria  normal  0.0852238  n/a   
 
 
-
 
NC_009076  BURPS1106A_1334  putative DNA-binding response regulator  57.61 
 
 
279 aa  282  4.0000000000000003e-75  Burkholderia pseudomallei 1106a  Bacteria  normal  0.07086  n/a   
 
 
-
 
NC_007434  BURPS1710b_1471  DNA-binding response regulator  57.61 
 
 
363 aa  281  7.000000000000001e-75  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.0000000100474  n/a   
 
 
-
 
NC_006348  BMA1795  DNA-binding response regulator  57.25 
 
 
279 aa  281  1e-74  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0488628  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1165  DNA-binding response regulator  57.25 
 
 
279 aa  281  1e-74  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.0000000742681  n/a   
 
 
-
 
NC_008836  BMA10229_A0704  DNA-binding response regulator  57.25 
 
 
279 aa  281  1e-74  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000213253  n/a   
 
 
-
 
NC_009080  BMA10247_0448  DNA-binding response regulator  57.25 
 
 
279 aa  281  1e-74  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.00573595  n/a   
 
 
-
 
NC_008390  Bamb_2257  two component LuxR family transcriptional regulator  55.47 
 
 
276 aa  247  2e-64  Burkholderia ambifaria AMMD  Bacteria  normal  0.0303794  n/a   
 
 
-
 
NC_007510  Bcep18194_A5547  two component LuxR family transcriptional regulator  56 
 
 
278 aa  246  4e-64  Burkholderia sp. 383  Bacteria  hitchhiker  0.0000595114  normal  0.307303 
 
 
-
 
NC_010551  BamMC406_2136  two component LuxR family transcriptional regulator  55.11 
 
 
276 aa  245  8e-64  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.00080353  normal  0.948234 
 
 
-
 
NC_010508  Bcenmc03_2243  two component LuxR family transcriptional regulator  56.2 
 
 
278 aa  244  9.999999999999999e-64  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000421268  normal 
 
 
-
 
NC_010084  Bmul_1058  two component LuxR family transcriptional regulator  56.3 
 
 
278 aa  244  9.999999999999999e-64  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000154316  normal 
 
 
-
 
NC_008060  Bcen_1607  two component LuxR family transcriptional regulator  55.47 
 
 
278 aa  240  2e-62  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0202468  n/a   
 
 
-
 
NC_008542  Bcen2424_2219  two component LuxR family transcriptional regulator  55.47 
 
 
278 aa  240  2e-62  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00895129  n/a   
 
 
-
 
NC_007952  Bxe_B1813  two component LuxR family transcriptional regulator  37.25 
 
 
249 aa  137  2e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.172477 
 
 
-
 
NC_010623  Bphy_5117  two component LuxR family transcriptional regulator  38.1 
 
 
253 aa  137  2e-31  Burkholderia phymatum STM815  Bacteria  normal  normal  0.180541 
 
 
-
 
NC_010676  Bphyt_4850  two component transcriptional regulator, LuxR family  36.08 
 
 
257 aa  130  3e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0778424  normal  0.0399542 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  39.86 
 
 
227 aa  95.5  1e-18  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  32.16 
 
 
209 aa  87.4  2e-16  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  32.86 
 
 
209 aa  86.3  5e-16  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  30.26 
 
 
230 aa  84.3  0.000000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  decreased coverage  0.00554548 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  28.02 
 
 
224 aa  84  0.000000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  32.37 
 
 
239 aa  83.2  0.000000000000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  29.86 
 
 
224 aa  82.8  0.000000000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  34.74 
 
 
209 aa  82.4  0.000000000000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  28.29 
 
 
207 aa  82  0.00000000000001  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  28.24 
 
 
246 aa  81.3  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  35 
 
 
217 aa  81.3  0.00000000000002  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  27.31 
 
 
224 aa  80.9  0.00000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008254  Meso_0596  two component LuxR family transcriptional regulator  32.27 
 
 
228 aa  81.6  0.00000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  30.77 
 
 
218 aa  81.3  0.00000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  26.32 
 
 
225 aa  80.5  0.00000000000003  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  28.57 
 
 
207 aa  80.1  0.00000000000004  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  28.57 
 
 
207 aa  80.1  0.00000000000004  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  31.72 
 
 
219 aa  80.1  0.00000000000004  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_013757  Gobs_2145  two component transcriptional regulator, LuxR family  28.44 
 
 
220 aa  80.1  0.00000000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0196231  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  29.35 
 
 
220 aa  80.1  0.00000000000004  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  31.58 
 
 
201 aa  80.1  0.00000000000004  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  33.79 
 
 
238 aa  79.7  0.00000000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3591  two component LuxR family transcriptional regulator  32.21 
 
 
240 aa  79.3  0.00000000000006  Acidovorax citrulli AAC00-1  Bacteria  normal  0.552533  hitchhiker  0.00313735 
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  30.48 
 
 
209 aa  79.7  0.00000000000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  30.54 
 
 
209 aa  79.7  0.00000000000006  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  30.54 
 
 
211 aa  79.3  0.00000000000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  33.79 
 
 
220 aa  79.3  0.00000000000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009719  Plav_1690  two component LuxR family transcriptional regulator  34.42 
 
 
215 aa  79.3  0.00000000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.104312 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  33.79 
 
 
219 aa  79.3  0.00000000000007  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_012669  Bcav_0717  two component transcriptional regulator, LuxR family  28.96 
 
 
209 aa  79  0.00000000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.854815  normal  0.189113 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  34.3 
 
 
222 aa  79  0.00000000000008  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  30.65 
 
 
221 aa  79  0.00000000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  30.65 
 
 
221 aa  79  0.00000000000009  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  27.31 
 
 
231 aa  79  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  30.2 
 
 
223 aa  78.6  0.0000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  28.86 
 
 
220 aa  78.2  0.0000000000001  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  32.41 
 
 
219 aa  79  0.0000000000001  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  31.72 
 
 
219 aa  77.4  0.0000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  32.41 
 
 
220 aa  77.4  0.0000000000002  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  30.34 
 
 
209 aa  77.4  0.0000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2603  two component LuxR family transcriptional regulator  27.63 
 
 
226 aa  77  0.0000000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0876088  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  32.41 
 
 
220 aa  77.4  0.0000000000003  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  30.7 
 
 
216 aa  77.4  0.0000000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  27.88 
 
 
250 aa  77.4  0.0000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  28.86 
 
 
220 aa  77.4  0.0000000000003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  32.41 
 
 
220 aa  77.4  0.0000000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  31.72 
 
 
220 aa  76.6  0.0000000000004  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  30.2 
 
 
213 aa  76.6  0.0000000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  31.34 
 
 
213 aa  76.3  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  29.46 
 
 
232 aa  76.3  0.0000000000006  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  30.59 
 
 
221 aa  75.9  0.0000000000008  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  30.05 
 
 
209 aa  75.9  0.0000000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  28.37 
 
 
219 aa  75.5  0.0000000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_011894  Mnod_1110  two component transcriptional regulator, LuxR family  33.12 
 
 
245 aa  75.1  0.000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.686827  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  30.15 
 
 
212 aa  75.1  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  27.36 
 
 
220 aa  75.1  0.000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  26.79 
 
 
226 aa  75.1  0.000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  27.63 
 
 
225 aa  74.3  0.000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  26.37 
 
 
213 aa  74.7  0.000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3000  two component LuxR family transcriptional regulator  27.42 
 
 
263 aa  74.7  0.000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.42213  n/a   
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  35.71 
 
 
267 aa  73.6  0.000000000003  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  26.17 
 
 
218 aa  73.6  0.000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_010682  Rpic_2046  two component transcriptional regulator, LuxR family  27.4 
 
 
219 aa  73.2  0.000000000004  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  29.91 
 
 
216 aa  73.2  0.000000000004  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  29.06 
 
 
226 aa  73.6  0.000000000004  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  29.58 
 
 
210 aa  73.2  0.000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  28.77 
 
 
222 aa  73.2  0.000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  27.86 
 
 
220 aa  73.2  0.000000000005  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  27.78 
 
 
226 aa  72.8  0.000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  27.65 
 
 
212 aa  72.8  0.000000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  30.14 
 
 
228 aa  72.8  0.000000000006  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  31.43 
 
 
220 aa  72.8  0.000000000006  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  29.56 
 
 
216 aa  72.4  0.000000000007  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3254  two component LuxR family transcriptional regulator  30 
 
 
201 aa  72.4  0.000000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.49762 
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  26.46 
 
 
236 aa  72.4  0.000000000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  26.46 
 
 
236 aa  72.4  0.000000000009  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  25.23 
 
 
216 aa  72.4  0.000000000009  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4854  putative two component LuxR family transcriptional regulator  27.62 
 
 
211 aa  72  0.00000000001  Cupriavidus metallidurans CH34  Bacteria  normal  0.133138  normal  0.31096 
 
 
-
 
NC_013595  Sros_0074  response regulator receiver protein  30.14 
 
 
207 aa  71.6  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>