More than 300 homologs were found in PanDaTox collection
for query gene Bphy_1975 on replicon NC_010622
Organism: Burkholderia phymatum STM815



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010622  Bphy_1975  two component LuxR family transcriptional regulator  100 
 
 
293 aa  587  1e-167  Burkholderia phymatum STM815  Bacteria  normal  0.0150451  normal 
 
 
-
 
NC_010681  Bphyt_1379  two component transcriptional regulator, LuxR family  66.79 
 
 
292 aa  355  6.999999999999999e-97  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0210202  hitchhiker  0.00446461 
 
 
-
 
NC_007951  Bxe_A3176  two component LuxR family transcriptional regulator  63.44 
 
 
292 aa  339  4e-92  Burkholderia xenovorans LB400  Bacteria  normal  0.0570221  normal  0.472976 
 
 
-
 
NC_009074  BURPS668_1325  putative DNA-binding response regulator  55.67 
 
 
279 aa  271  1e-71  Burkholderia pseudomallei 668  Bacteria  normal  0.0852238  n/a   
 
 
-
 
NC_009076  BURPS1106A_1334  putative DNA-binding response regulator  55.32 
 
 
279 aa  269  5e-71  Burkholderia pseudomallei 1106a  Bacteria  normal  0.07086  n/a   
 
 
-
 
NC_007434  BURPS1710b_1471  DNA-binding response regulator  55.32 
 
 
363 aa  268  8.999999999999999e-71  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.0000000100474  n/a   
 
 
-
 
NC_006348  BMA1795  DNA-binding response regulator  54.96 
 
 
279 aa  267  1e-70  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0488628  n/a   
 
 
-
 
NC_009080  BMA10247_0448  DNA-binding response regulator  54.96 
 
 
279 aa  267  1e-70  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.00573595  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1165  DNA-binding response regulator  54.96 
 
 
279 aa  267  1e-70  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.0000000742681  n/a   
 
 
-
 
NC_008836  BMA10229_A0704  DNA-binding response regulator  54.96 
 
 
279 aa  267  1e-70  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000213253  n/a   
 
 
-
 
NC_007651  BTH_I1094  DNA-binding response regulator  56.25 
 
 
279 aa  266  2e-70  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000582737  n/a   
 
 
-
 
NC_010508  Bcenmc03_2243  two component LuxR family transcriptional regulator  56.52 
 
 
278 aa  236  4e-61  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000421268  normal 
 
 
-
 
NC_010084  Bmul_1058  two component LuxR family transcriptional regulator  56.47 
 
 
278 aa  234  1.0000000000000001e-60  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000154316  normal 
 
 
-
 
NC_008390  Bamb_2257  two component LuxR family transcriptional regulator  55 
 
 
276 aa  233  2.0000000000000002e-60  Burkholderia ambifaria AMMD  Bacteria  normal  0.0303794  n/a   
 
 
-
 
NC_010551  BamMC406_2136  two component LuxR family transcriptional regulator  55 
 
 
276 aa  233  2.0000000000000002e-60  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.00080353  normal  0.948234 
 
 
-
 
NC_007510  Bcep18194_A5547  two component LuxR family transcriptional regulator  55.16 
 
 
278 aa  233  3e-60  Burkholderia sp. 383  Bacteria  hitchhiker  0.0000595114  normal  0.307303 
 
 
-
 
NC_008060  Bcen_1607  two component LuxR family transcriptional regulator  55.8 
 
 
278 aa  232  6e-60  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0202468  n/a   
 
 
-
 
NC_008542  Bcen2424_2219  two component LuxR family transcriptional regulator  55.8 
 
 
278 aa  232  6e-60  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00895129  n/a   
 
 
-
 
NC_007952  Bxe_B1813  two component LuxR family transcriptional regulator  39.18 
 
 
249 aa  145  6e-34  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.172477 
 
 
-
 
NC_010623  Bphy_5117  two component LuxR family transcriptional regulator  36.68 
 
 
253 aa  143  3e-33  Burkholderia phymatum STM815  Bacteria  normal  normal  0.180541 
 
 
-
 
NC_010676  Bphyt_4850  two component transcriptional regulator, LuxR family  37.55 
 
 
257 aa  139  4.999999999999999e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0778424  normal  0.0399542 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  39.01 
 
 
227 aa  95.9  7e-19  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  32.57 
 
 
209 aa  86.7  4e-16  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  35.89 
 
 
222 aa  83.6  0.000000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  30.22 
 
 
246 aa  82.8  0.000000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  32.57 
 
 
209 aa  82.4  0.000000000000009  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  29.27 
 
 
224 aa  82  0.00000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  31.28 
 
 
224 aa  80.9  0.00000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  29.33 
 
 
231 aa  80.1  0.00000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  31.98 
 
 
209 aa  79.7  0.00000000000005  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  29.58 
 
 
250 aa  78.2  0.0000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  29.95 
 
 
209 aa  77.8  0.0000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  33.95 
 
 
228 aa  77  0.0000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2603  two component LuxR family transcriptional regulator  28.63 
 
 
226 aa  75.5  0.000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0876088  n/a   
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  29.5 
 
 
227 aa  75.1  0.000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  28.82 
 
 
225 aa  74.3  0.000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_007413  Ava_3072  two component LuxR family transcriptional regulator  27.27 
 
 
209 aa  73.6  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.875677  normal 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  29.89 
 
 
211 aa  73.9  0.000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  29.52 
 
 
220 aa  73.6  0.000000000004  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  32.11 
 
 
209 aa  73.6  0.000000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  29.52 
 
 
220 aa  73.6  0.000000000004  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  29.52 
 
 
220 aa  73.2  0.000000000006  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  29.25 
 
 
219 aa  72.8  0.000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  30.13 
 
 
220 aa  72.8  0.000000000006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2837  response regulator receiver protein  31.9 
 
 
262 aa  73.2  0.000000000006  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000311945  normal  0.812847 
 
 
-
 
NC_003295  RSc1185  transcription regulator protein  33.78 
 
 
222 aa  72.8  0.000000000007  Ralstonia solanacearum GMI1000  Bacteria  normal  0.124825  normal  0.600184 
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  35.58 
 
 
243 aa  72.8  0.000000000007  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_012856  Rpic12D_1120  two component transcriptional regulator, LuxR family  33.78 
 
 
219 aa  72.8  0.000000000007  Ralstonia pickettii 12D  Bacteria  normal  0.0994252  normal  0.118956 
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  30.9 
 
 
201 aa  72.4  0.000000000008  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  29.36 
 
 
220 aa  72.4  0.000000000009  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  28.85 
 
 
207 aa  72  0.00000000001  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  29.58 
 
 
220 aa  71.6  0.00000000001  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  26.84 
 
 
212 aa  71.6  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1028  two component transcriptional regulator, LuxR family  33.78 
 
 
222 aa  71.2  0.00000000002  Ralstonia pickettii 12J  Bacteria  normal  0.146412  normal  0.260968 
 
 
-
 
NC_009719  Plav_1690  two component LuxR family transcriptional regulator  31.03 
 
 
215 aa  70.9  0.00000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.104312 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  31.72 
 
 
209 aa  71.6  0.00000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2046  two component transcriptional regulator, LuxR family  27.19 
 
 
219 aa  70.5  0.00000000003  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  31.36 
 
 
209 aa  70.5  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  29.17 
 
 
275 aa  70.5  0.00000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  28.88 
 
 
217 aa  70.5  0.00000000003  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  29.86 
 
 
220 aa  70.5  0.00000000004  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_013235  Namu_4606  two component transcriptional regulator, LuxR family  32.85 
 
 
207 aa  70.1  0.00000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.296562 
 
 
-
 
NC_012856  Rpic12D_1738  two component transcriptional regulator, LuxR family  27.4 
 
 
219 aa  70.1  0.00000000004  Ralstonia pickettii 12D  Bacteria  normal  0.0459515  normal  0.949758 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  32.43 
 
 
217 aa  70.5  0.00000000004  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal 
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  28.72 
 
 
258 aa  69.7  0.00000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  29.05 
 
 
220 aa  69.7  0.00000000005  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  27.23 
 
 
226 aa  69.7  0.00000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  29.02 
 
 
232 aa  70.1  0.00000000005  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  30.36 
 
 
221 aa  69.3  0.00000000006  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  26.87 
 
 
213 aa  69.3  0.00000000006  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_1981  two component transcriptional regulator, LuxR family  29.57 
 
 
222 aa  69.3  0.00000000006  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  31.96 
 
 
216 aa  69.3  0.00000000006  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  30.41 
 
 
220 aa  69.3  0.00000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1686  two component LuxR family transcriptional regulator  29.96 
 
 
240 aa  69.7  0.00000000006  Methylibium petroleiphilum PM1  Bacteria  normal  0.173725  normal  0.554277 
 
 
-
 
NC_009439  Pmen_4183  two component LuxR family transcriptional regulator  27.8 
 
 
220 aa  69.3  0.00000000007  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  29.03 
 
 
219 aa  69.3  0.00000000008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  29.05 
 
 
220 aa  68.9  0.00000000009  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_011894  Mnod_1110  two component transcriptional regulator, LuxR family  29.56 
 
 
245 aa  67.4  0.0000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.686827  n/a   
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  25.73 
 
 
213 aa  68.2  0.0000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  28.57 
 
 
220 aa  67.4  0.0000000002  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  30.67 
 
 
216 aa  67  0.0000000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0415  LuxR family transcriptional regulator  27.92 
 
 
255 aa  67.4  0.0000000003  Brucella suis 1330  Bacteria  normal  0.272996  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  26.42 
 
 
207 aa  67.4  0.0000000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_011353  ECH74115_4883  transcriptional regulator, LuxR family  26.32 
 
 
200 aa  67  0.0000000003  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  26.42 
 
 
207 aa  67.4  0.0000000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009504  BOV_A0358  LuxR family transcriptional regulator  27.92 
 
 
255 aa  67.4  0.0000000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  29.86 
 
 
218 aa  67.4  0.0000000003  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  32.61 
 
 
241 aa  66.6  0.0000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03368  predicted DNA-binding response regulator in two-component regulatory system  26.32 
 
 
200 aa  66.2  0.0000000005  Escherichia coli BL21(DE3)  Bacteria  decreased coverage  0.000358261  n/a   
 
 
-
 
CP001637  EcDH1_0193  transcriptional regulator, LuxR family  26.32 
 
 
200 aa  66.2  0.0000000005  Escherichia coli DH1  Bacteria  decreased coverage  0.000000210245  n/a   
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  28.26 
 
 
218 aa  66.6  0.0000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_009800  EcHS_A3723  LuxR family transcriptional regulator  26.32 
 
 
200 aa  66.2  0.0000000005  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0197  two component LuxR family transcriptional regulator  26.32 
 
 
200 aa  66.2  0.0000000005  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.000437068  normal 
 
 
-
 
NC_012892  B21_03321  hypothetical protein  26.32 
 
 
200 aa  66.2  0.0000000005  Escherichia coli BL21  Bacteria  decreased coverage  0.00023179  n/a   
 
 
-
 
NC_009801  EcE24377A_4008  LuxR family transcriptional regulator  26.32 
 
 
200 aa  66.2  0.0000000005  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3925  transcriptional regulator, LuxR family  26.32 
 
 
200 aa  66.2  0.0000000005  Shigella boydii CDC 3083-94  Bacteria  normal  0.237516  n/a   
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  28.57 
 
 
248 aa  66.6  0.0000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  26.18 
 
 
216 aa  66.6  0.0000000005  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2635  response regulator receiver  28.57 
 
 
207 aa  66.2  0.0000000006  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0717  two component transcriptional regulator, LuxR family  28.31 
 
 
209 aa  66.2  0.0000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.854815  normal  0.189113 
 
 
-
 
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