More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_1120 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012856  Rpic12D_1120  two component transcriptional regulator, LuxR family  100 
 
 		 219 aa  432  1e-120  Ralstonia pickettii 12D  Bacteria  normal  0.0994252  normal  0.118956 
 
 
-
 
NC_010682  Rpic_1028  two component transcriptional regulator, LuxR family  98.2 
 
 		 222 aa  426  1e-118  Ralstonia pickettii 12J  Bacteria  normal  0.146412  normal  0.260968 
 
 
-
 
NC_003295  RSc1185  transcription regulator protein  96.85 
 
 		 222 aa  421  1e-117  Ralstonia solanacearum GMI1000  Bacteria  normal  0.124825  normal  0.600184 
 
 
-
 
NC_003296  RSp0338  negative regulator of exopolysaccharide production transcription regulator protein  55.91 
 
 		 236 aa  236  2e-61  Ralstonia solanacearum GMI1000  Bacteria  normal  0.104039  normal  1 
 
 
-
 
NC_012857  Rpic12D_3718  two component transcriptional regulator, LuxR family  53.64 
 
 		 231 aa  232  4.0000000000000004e-60  Ralstonia pickettii 12D  Bacteria  normal  0.0262455  normal  0.571903 
 
 
-
 
NC_010678  Rpic_4795  two component transcriptional regulator, LuxR family  53.33 
 
 		 221 aa  217  1e-55  Ralstonia pickettii 12J  Bacteria  normal  1  normal  0.180506 
 
 
-
 
NC_010678  Rpic_4844  two component transcriptional regulator, LuxR family  42.67 
 
 		 303 aa  136  2e-31  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012857  Rpic12D_3767  two component transcriptional regulator, LuxR family  42.67 
 
 		 303 aa  136  2e-31  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003296  RS03679  transcription regulator protein  41.18 
 
 		 299 aa  127  1.0000000000000001e-28  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.0000906887  normal  0.0907157 
 
 
-
 
NC_007348  Reut_B5353  regulatory protein, LuxR  33.69 
 
 		 330 aa  116  3e-25  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  34.74 
 
 		 210 aa  106  3e-22  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007348  Reut_B5380  regulatory protein, LuxR  61.73 
 
 		 315 aa  99.8  3e-20  Ralstonia eutropha JMP134  Bacteria  normal  0.869493  n/a   
 
 
-
 
NC_007974  Rmet_5861  LuxR family transcriptional regulator  62.03 
 
 		 309 aa  99  5e-20  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.971396 
 
 
-
 
NC_007974  Rmet_5831  LuxR family transcriptional regulator  36.27 
 
 		 276 aa  98.6  6e-20  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010623  Bphy_5117  two component LuxR family transcriptional regulator  31.97 
 
 		 253 aa  95.1  7e-19  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.180541 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  31.47 
 
 		 248 aa  94  1e-18  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  34.58 
 
 		 224 aa  94  2e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  31.72 
 
 		 227 aa  94  2e-18  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007952  Bxe_B1813  two component LuxR family transcriptional regulator  28.34 
 
 		 249 aa  93.6  2e-18  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.172477 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  33.49 
 
 		 216 aa  93.6  2e-18  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  39.88 
 
 		 227 aa  92.8  3e-18  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  30.28 
 
 		 239 aa  92  5e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  31.16 
 
 		 222 aa  91.3  1e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  32.08 
 
 		 220 aa  90.9  1e-17  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  30.41 
 
 		 212 aa  89.4  4e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  29.76 
 
 		 213 aa  88.6  6e-17  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  29.76 
 
 		 209 aa  88.6  6e-17  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009972  Haur_4341  two component LuxR family transcriptional regulator  32.71 
 
 		 343 aa  87.8  1e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  30.14 
 
 		 219 aa  87  2e-16  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_009832  Spro_3589  two component LuxR family transcriptional regulator  29.63 
 
 		 210 aa  86.3  3e-16  Serratia proteamaculans 568  Bacteria  normal  0.993543  normal  0.0443312 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  29.63 
 
 		 209 aa  86.3  3e-16  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_4850  two component transcriptional regulator, LuxR family  29.02 
 
 		 257 aa  86.7  3e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0778424  normal  0.0399542 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  34.56 
 
 		 209 aa  86.7  3e-16  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  28.64 
 
 		 219 aa  86.3  3e-16  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  30.97 
 
 		 221 aa  85.9  4e-16  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  32.88 
 
 		 224 aa  85.5  6e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  30.56 
 
 		 209 aa  83.6  0.000000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  30.32 
 
 		 218 aa  84  0.000000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  28.57 
 
 		 221 aa  83.6  0.000000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  28.11 
 
 		 216 aa  83.2  0.000000000000003  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  31.02 
 
 		 209 aa  82.8  0.000000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  28.84 
 
 		 204 aa  82.8  0.000000000000004  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  28.7 
 
 		 219 aa  82.8  0.000000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  28.5 
 
 		 209 aa  82.4  0.000000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  29.13 
 
 		 218 aa  81.6  0.000000000000007  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.52 
 
 		 216 aa  82  0.000000000000007  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  27.14 
 
 		 213 aa  81.6  0.000000000000008  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  27.09 
 
 		 212 aa  81.3  0.00000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  30 
 
 		 220 aa  81.3  0.00000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  29.44 
 
 		 221 aa  80.9  0.00000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  27.01 
 
 		 224 aa  80.5  0.00000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  29.6 
 
 		 220 aa  80.1  0.00000000000002  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_002947  PP_2672  LuxR family DNA-binding response regulator  30.66 
 
 		 212 aa  79.7  0.00000000000003  Pseudomonas putida KT2440  Bacteria  normal  0.24109  normal  1 
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  33.09 
 
 		 275 aa  79.7  0.00000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal  1 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  30.51 
 
 		 221 aa  79.7  0.00000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  28.77 
 
 		 238 aa  79.3  0.00000000000004  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_1159  two component LuxR family transcriptional regulator  28.02 
 
 		 209 aa  79  0.00000000000005  Sphingomonas wittichii RW1  Bacteria  normal  0.942847  normal  0.660482 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  28.64 
 
 		 215 aa  79  0.00000000000005  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  27.27 
 
 		 216 aa  79  0.00000000000005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  25.6 
 
 		 227 aa  78.6  0.00000000000007  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  28.11 
 
 		 230 aa  78.6  0.00000000000007  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_011663  Sbal223_3070  two component transcriptional regulator, LuxR family  29.56 
 
 		 216 aa  78.6  0.00000000000008  Shewanella baltica OS223  Bacteria  decreased coverage  0.000689776  unclonable  0.00000000000283062 
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  34.09 
 
 		 230 aa  78.2  0.00000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_009512  Pput_3091  two component LuxR family transcriptional regulator  29.25 
 
 		 212 aa  78.2  0.00000000000008  Pseudomonas putida F1  Bacteria  normal  0.425372  normal  1 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  29.13 
 
 		 216 aa  78.2  0.00000000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  29.52 
 
 		 206 aa  78.2  0.00000000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal  1 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  27.4 
 
 		 225 aa  78.2  0.00000000000009  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  33.59 
 
 		 219 aa  77.8  0.0000000000001  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_3271  response regulator  27.31 
 
 		 214 aa  77.4  0.0000000000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.0222898  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  27.83 
 
 		 219 aa  77.8  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  28.5 
 
 		 215 aa  77.4  0.0000000000001  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  27.54 
 
 		 210 aa  77.8  0.0000000000001  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  28.5 
 
 		 220 aa  77  0.0000000000002  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  24.5 
 
 		 208 aa  77.4  0.0000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  29.17 
 
 		 209 aa  77.4  0.0000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  26.73 
 
 		 219 aa  77.4  0.0000000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  28.64 
 
 		 207 aa  77  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  29.11 
 
 		 220 aa  77  0.0000000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  29.36 
 
 		 239 aa  77  0.0000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  28.5 
 
 		 220 aa  77  0.0000000000002  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I2370  nitrate/nitrite response regulator protein NarP  28.5 
 
 		 203 aa  76.3  0.0000000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  28.5 
 
 		 220 aa  76.6  0.0000000000003  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_012917  PC1_0582  two component transcriptional regulator, LuxR family  28.96 
 
 		 204 aa  76.6  0.0000000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  29.77 
 
 		 220 aa  76.3  0.0000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  33.56 
 
 		 218 aa  76.3  0.0000000000003  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  26.57 
 
 		 223 aa  76.3  0.0000000000003  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_010322  PputGB1_3131  two component LuxR family transcriptional regulator  28.77 
 
 		 212 aa  76.6  0.0000000000003  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.33361 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  28.97 
 
 		 220 aa  76.6  0.0000000000003  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  28.83 
 
 		 216 aa  75.9  0.0000000000004  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  27.52 
 
 		 220 aa  75.9  0.0000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.495874 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  28.84 
 
 		 214 aa  75.9  0.0000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_012791  Vapar_3992  two component transcriptional regulator, LuxR family  32.54 
 
 		 214 aa  75.9  0.0000000000004  Variovorax paradoxus S110  Bacteria  normal  0.82671  n/a   
 
 
-
 
NC_009052  Sbal_1241  two component LuxR family transcriptional regulator  29.06 
 
 		 216 aa  76.3  0.0000000000004  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000399601  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  28.31 
 
 		 219 aa  76.3  0.0000000000004  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_013421  Pecwa_1594  response regulator  27.65 
 
 		 218 aa  75.9  0.0000000000005  Pectobacterium wasabiae WPP163  Bacteria  normal  0.518893  n/a   
 
 
-
 
NC_012917  PC1_2669  response regulator  27.65 
 
 		 218 aa  75.9  0.0000000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  decreased coverage  0.000700042  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  28.7 
 
 		 220 aa  75.9  0.0000000000005  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  28.7 
 
 		 220 aa  75.9  0.0000000000005  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  28.23 
 
 		 211 aa  75.5  0.0000000000005  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  31.03 
 
 		 221 aa  75.9  0.0000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
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