More than 300 homologs were found in PanDaTox collection
for query gene Rpic_1028 on replicon NC_010682
Organism: Ralstonia pickettii 12J



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010682  Rpic_1028  two component transcriptional regulator, LuxR family  100 
 
 		 222 aa  439  9.999999999999999e-123  Ralstonia pickettii 12J  Bacteria  normal  0.146412  normal  0.260968 
 
 
-
 
NC_003295  RSc1185  transcription regulator protein  97.75 
 
 		 222 aa  429  1e-119  Ralstonia solanacearum GMI1000  Bacteria  normal  0.124825  normal  0.600184 
 
 
-
 
NC_012856  Rpic12D_1120  two component transcriptional regulator, LuxR family  98.2 
 
 		 219 aa  426  1e-118  Ralstonia pickettii 12D  Bacteria  normal  0.0994252  normal  0.118956 
 
 
-
 
NC_003296  RSp0338  negative regulator of exopolysaccharide production transcription regulator protein  55.91 
 
 		 236 aa  241  9e-63  Ralstonia solanacearum GMI1000  Bacteria  normal  0.104039  normal  1 
 
 
-
 
NC_012857  Rpic12D_3718  two component transcriptional regulator, LuxR family  53.64 
 
 		 231 aa  236  2e-61  Ralstonia pickettii 12D  Bacteria  normal  0.0262455  normal  0.571903 
 
 
-
 
NC_010678  Rpic_4795  two component transcriptional regulator, LuxR family  53.33 
 
 		 221 aa  221  6e-57  Ralstonia pickettii 12J  Bacteria  normal  1  normal  0.180506 
 
 
-
 
NC_012857  Rpic12D_3767  two component transcriptional regulator, LuxR family  42.04 
 
 		 303 aa  134  9.999999999999999e-31  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010678  Rpic_4844  two component transcriptional regulator, LuxR family  42.04 
 
 		 303 aa  134  9.999999999999999e-31  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003296  RS03679  transcription regulator protein  39.64 
 
 		 299 aa  125  5e-28  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.0000906887  normal  0.0907157 
 
 
-
 
NC_007348  Reut_B5353  regulatory protein, LuxR  33.69 
 
 		 330 aa  117  9.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  35.35 
 
 		 210 aa  109  4.0000000000000004e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007348  Reut_B5380  regulatory protein, LuxR  60.49 
 
 		 315 aa  98.2  8e-20  Ralstonia eutropha JMP134  Bacteria  normal  0.869493  n/a   
 
 
-
 
NC_007974  Rmet_5831  LuxR family transcriptional regulator  35.78 
 
 		 276 aa  97.4  2e-19  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007974  Rmet_5861  LuxR family transcriptional regulator  60.76 
 
 		 309 aa  97.4  2e-19  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.971396 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  33.03 
 
 		 216 aa  94.7  9e-19  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  31.28 
 
 		 227 aa  94.7  1e-18  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  30.17 
 
 		 248 aa  94.4  1e-18  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010623  Bphy_5117  two component LuxR family transcriptional regulator  30.74 
 
 		 253 aa  94  2e-18  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.180541 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  34.11 
 
 		 224 aa  93.2  3e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  35.87 
 
 		 227 aa  93.2  3e-18  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007952  Bxe_B1813  two component LuxR family transcriptional regulator  27.92 
 
 		 249 aa  92.8  4e-18  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.172477 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  35.02 
 
 		 209 aa  91.7  7e-18  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  28.44 
 
 		 239 aa  89.7  3e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_4341  two component LuxR family transcriptional regulator  33.18 
 
 		 343 aa  89.4  4e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  30.19 
 
 		 220 aa  89  5e-17  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  30.29 
 
 		 213 aa  88.2  9e-17  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  29.68 
 
 		 212 aa  87.4  1e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  29.3 
 
 		 204 aa  87.8  1e-16  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  28.99 
 
 		 209 aa  87.8  1e-16  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009832  Spro_3589  two component LuxR family transcriptional regulator  29.17 
 
 		 210 aa  85.9  5e-16  Serratia proteamaculans 568  Bacteria  normal  0.993543  normal  0.0443312 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  29.95 
 
 		 222 aa  85.9  5e-16  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010676  Bphyt_4850  two component transcriptional regulator, LuxR family  28.63 
 
 		 257 aa  85.1  7e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0778424  normal  0.0399542 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  30.09 
 
 		 221 aa  84.7  0.000000000000001  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  29.3 
 
 		 209 aa  84  0.000000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  28.24 
 
 		 209 aa  83.6  0.000000000000003  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  28.3 
 
 		 221 aa  83.2  0.000000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  29.22 
 
 		 219 aa  82.8  0.000000000000004  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  31.98 
 
 		 224 aa  82.8  0.000000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  30.36 
 
 		 218 aa  82.4  0.000000000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  28.24 
 
 		 209 aa  80.5  0.00000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  28.26 
 
 		 219 aa  80.5  0.00000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  26.32 
 
 		 227 aa  80.5  0.00000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  27.31 
 
 		 219 aa  80.5  0.00000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_1766  transcriptional regulator NarL  28.51 
 
 		 216 aa  79.3  0.00000000000004  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  28.64 
 
 		 216 aa  79  0.00000000000006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_009512  Pput_3091  two component LuxR family transcriptional regulator  29.11 
 
 		 212 aa  79  0.00000000000006  Pseudomonas putida F1  Bacteria  normal  0.425372  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  27.18 
 
 		 218 aa  78.6  0.00000000000007  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  30.59 
 
 		 209 aa  78.6  0.00000000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  26.34 
 
 		 212 aa  78.6  0.00000000000007  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_2672  LuxR family DNA-binding response regulator  29.11 
 
 		 212 aa  78.6  0.00000000000008  Pseudomonas putida KT2440  Bacteria  normal  0.24109  normal  1 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  28.38 
 
 		 221 aa  78.6  0.00000000000008  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.05 
 
 		 216 aa  78.2  0.00000000000008  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  33.09 
 
 		 275 aa  78.2  0.00000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal  1 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  29.28 
 
 		 220 aa  78.2  0.00000000000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  29.55 
 
 		 218 aa  77.8  0.0000000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  26.39 
 
 		 216 aa  77.4  0.0000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  27.27 
 
 		 223 aa  77.8  0.0000000000001  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  28.05 
 
 		 238 aa  77.8  0.0000000000001  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_3116  two component transcriptional regulator, LuxR family  29.49 
 
 		 215 aa  77.4  0.0000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  26.67 
 
 		 213 aa  77.4  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_3131  two component LuxR family transcriptional regulator  28.64 
 
 		 212 aa  77.4  0.0000000000002  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.33361 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  25.71 
 
 		 224 aa  76.6  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  29.58 
 
 		 206 aa  76.6  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal  1 
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  34.09 
 
 		 230 aa  77  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  28.5 
 
 		 215 aa  77  0.0000000000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  28.89 
 
 		 220 aa  77  0.0000000000002  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  28.24 
 
 		 221 aa  76.6  0.0000000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  26.34 
 
 		 215 aa  76.3  0.0000000000003  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  26.32 
 
 		 223 aa  76.6  0.0000000000003  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  27.49 
 
 		 219 aa  76.6  0.0000000000003  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  32.82 
 
 		 219 aa  76.3  0.0000000000004  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  27.27 
 
 		 210 aa  75.9  0.0000000000004  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  23.88 
 
 		 208 aa  75.9  0.0000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  26.32 
 
 		 223 aa  76.3  0.0000000000004  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  26.32 
 
 		 223 aa  75.9  0.0000000000004  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  29.3 
 
 		 224 aa  75.5  0.0000000000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  28.19 
 
 		 221 aa  75.5  0.0000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  28.7 
 
 		 207 aa  75.5  0.0000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_010681  Bphyt_2130  two component transcriptional regulator, LuxR family  26.96 
 
 		 239 aa  75.5  0.0000000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  28.5 
 
 		 219 aa  75.1  0.0000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  26.51 
 
 		 201 aa  75.1  0.0000000000009  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  28.83 
 
 		 219 aa  74.3  0.000000000001  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  28.1 
 
 		 223 aa  74.7  0.000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007974  Rmet_5646  putative LuxR family transcriptional regulator  52.05 
 
 		 231 aa  74.3  0.000000000001  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.387707 
 
 
-
 
NC_009511  Swit_1159  two component LuxR family transcriptional regulator  27.32 
 
 		 209 aa  74.3  0.000000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.942847  normal  0.660482 
 
 
-
 
NC_012917  PC1_0582  two component transcriptional regulator, LuxR family  28.3 
 
 		 204 aa  74.3  0.000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  25.69 
 
 		 212 aa  73.9  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_012791  Vapar_3992  two component transcriptional regulator, LuxR family  32.06 
 
 		 214 aa  73.9  0.000000000002  Variovorax paradoxus S110  Bacteria  normal  0.82671  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  27.78 
 
 		 220 aa  73.9  0.000000000002  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  27.05 
 
 		 210 aa  73.9  0.000000000002  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_007520  Tcr_1382  two component LuxR family transcriptional regulator  27.19 
 
 		 232 aa  73.9  0.000000000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  29.3 
 
 		 210 aa  73.6  0.000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  hitchhiker  0.000518478 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  28.37 
 
 		 220 aa  73.9  0.000000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  26.92 
 
 		 232 aa  73.9  0.000000000002  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  27.78 
 
 		 220 aa  73.9  0.000000000002  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  28.24 
 
 		 220 aa  73.6  0.000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009719  Plav_1690  two component LuxR family transcriptional regulator  31.13 
 
 		 215 aa  73.6  0.000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.104312 
 
 
-
 
NC_011769  DvMF_1129  two component transcriptional regulator, LuxR family  27.78 
 
 		 231 aa  73.2  0.000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  29.68 
 
 		 216 aa  73.2  0.000000000003  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  26.42 
 
 		 209 aa  73.2  0.000000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
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