More than 300 homologs were found in PanDaTox collection
for query gene PC1_0582 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_0582  two component transcriptional regulator, LuxR family  100 
 
 		 204 aa  416  9.999999999999999e-116  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_03368  predicted DNA-binding response regulator in two-component regulatory system  36.45 
 
 		 200 aa  137  8.999999999999999e-32  Escherichia coli BL21(DE3)  Bacteria  decreased coverage  0.000358261  n/a   
 
 
-
 
CP001637  EcDH1_0193  transcriptional regulator, LuxR family  36.45 
 
 		 200 aa  137  8.999999999999999e-32  Escherichia coli DH1  Bacteria  decreased coverage  0.000000210245  n/a   
 
 
-
 
NC_010468  EcolC_0197  two component LuxR family transcriptional regulator  36.45 
 
 		 200 aa  137  8.999999999999999e-32  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.000437068  normal  1 
 
 
-
 
NC_009801  EcE24377A_4008  LuxR family transcriptional regulator  36.45 
 
 		 200 aa  137  8.999999999999999e-32  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_03321  hypothetical protein  36.45 
 
 		 200 aa  137  8.999999999999999e-32  Escherichia coli BL21  Bacteria  decreased coverage  0.00023179  n/a   
 
 
-
 
NC_009800  EcHS_A3723  LuxR family transcriptional regulator  36.45 
 
 		 200 aa  137  8.999999999999999e-32  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_010658  SbBS512_E3925  transcriptional regulator, LuxR family  36.45 
 
 		 200 aa  137  8.999999999999999e-32  Shigella boydii CDC 3083-94  Bacteria  normal  0.237516  n/a   
 
 
-
 
NC_010498  EcSMS35_3824  LuxR family transcriptional regulator  36.45 
 
 		 200 aa  137  1e-31  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.201276 
 
 
-
 
NC_011353  ECH74115_4883  transcriptional regulator, LuxR family  35.96 
 
 		 200 aa  135  4e-31  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011094  SeSA_A3800  putative transcriptional regulator  34.8 
 
 		 200 aa  131  6.999999999999999e-30  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C3921  putative transcriptional regulator  34.8 
 
 		 200 aa  131  6.999999999999999e-30  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011149  SeAg_B3813  putative transcriptional regulator  34.8 
 
 		 200 aa  131  6.999999999999999e-30  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_011205  SeD_A3981  putative transcriptional regulator  34.8 
 
 		 200 aa  129  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  0.347336 
 
 
-
 
NC_011080  SNSL254_A3878  putative transcriptional regulator  34.31 
 
 		 200 aa  127  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_1738  two component transcriptional regulator, LuxR family  32.68 
 
 		 219 aa  110  1.0000000000000001e-23  Ralstonia pickettii 12D  Bacteria  normal  0.0459515  normal  0.949758 
 
 
-
 
NC_010682  Rpic_2046  two component transcriptional regulator, LuxR family  32.2 
 
 		 219 aa  109  3e-23  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  28.85 
 
 		 221 aa  98.2  7e-20  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  32.71 
 
 		 220 aa  97.4  1e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008391  Bamb_4255  LuxR family transcriptional regulator  31.94 
 
 		 227 aa  96.7  2e-19  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0102406 
 
 
-
 
NC_010552  BamMC406_4781  LuxR family transcriptional regulator  31.94 
 
 		 227 aa  96.3  3e-19  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0502492  normal  1 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  29.44 
 
 		 235 aa  90.9  1e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  29.27 
 
 		 211 aa  89.7  3e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  30.66 
 
 		 215 aa  88.6  6e-17  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  29.38 
 
 		 219 aa  87.8  1e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  29.19 
 
 		 238 aa  85.9  4e-16  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  31.75 
 
 		 217 aa  85.5  5e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  31.75 
 
 		 217 aa  85.5  5e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  31.03 
 
 		 212 aa  85.1  7e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  29.56 
 
 		 216 aa  84  0.000000000000001  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  32.39 
 
 		 215 aa  84.3  0.000000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  28.92 
 
 		 220 aa  83.2  0.000000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  27.98 
 
 		 227 aa  83.6  0.000000000000002  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  28.77 
 
 		 216 aa  82.8  0.000000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  29.91 
 
 		 216 aa  82.8  0.000000000000003  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  28.43 
 
 		 209 aa  82.8  0.000000000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  28.57 
 
 		 209 aa  83.2  0.000000000000003  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  29.72 
 
 		 219 aa  82.4  0.000000000000004  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  27.49 
 
 		 219 aa  82.8  0.000000000000004  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  31.46 
 
 		 215 aa  81.6  0.000000000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  27.49 
 
 		 220 aa  81.6  0.000000000000007  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  28.3 
 
 		 220 aa  81.6  0.000000000000008  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  28.85 
 
 		 218 aa  80.9  0.00000000000001  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  27.01 
 
 		 220 aa  80.5  0.00000000000001  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  27.01 
 
 		 220 aa  80.5  0.00000000000001  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  37.4 
 
 		 219 aa  80.1  0.00000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  27.01 
 
 		 220 aa  80.1  0.00000000000002  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  32.39 
 
 		 211 aa  79.7  0.00000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  25.49 
 
 		 222 aa  79.7  0.00000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  28.37 
 
 		 219 aa  79.3  0.00000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  26.61 
 
 		 221 aa  79.7  0.00000000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  28.44 
 
 		 215 aa  79.3  0.00000000000004  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  27.94 
 
 		 220 aa  79.3  0.00000000000004  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  31.63 
 
 		 216 aa  79.3  0.00000000000004  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  38.66 
 
 		 208 aa  79  0.00000000000005  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  29.06 
 
 		 217 aa  79  0.00000000000005  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  29.44 
 
 		 216 aa  78.6  0.00000000000006  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  29.44 
 
 		 216 aa  78.6  0.00000000000006  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  27.45 
 
 		 220 aa  78.6  0.00000000000007  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  27.45 
 
 		 220 aa  78.6  0.00000000000007  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  30.2 
 
 		 206 aa  77.8  0.0000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  29.72 
 
 		 220 aa  77.8  0.0000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  27.54 
 
 		 219 aa  77.8  0.0000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_003295  RSc1185  transcription regulator protein  28.3 
 
 		 222 aa  77  0.0000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.124825  normal  0.600184 
 
 
-
 
NC_012856  Rpic12D_1120  two component transcriptional regulator, LuxR family  28.96 
 
 		 219 aa  76.6  0.0000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.0994252  normal  0.118956 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  28.14 
 
 		 213 aa  77  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  27.18 
 
 		 217 aa  77  0.0000000000002  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  31.39 
 
 		 211 aa  76.3  0.0000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  28.16 
 
 		 209 aa  76.3  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  28.04 
 
 		 219 aa  75.5  0.0000000000005  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  27.64 
 
 		 220 aa  75.5  0.0000000000005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0091  response regulator receiver protein  33.86 
 
 		 204 aa  75.5  0.0000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.520551  normal  1 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  28.37 
 
 		 224 aa  75.5  0.0000000000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal  1 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  26.32 
 
 		 220 aa  75.5  0.0000000000005  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009439  Pmen_4040  two component LuxR family transcriptional regulator  28.5 
 
 		 216 aa  75.5  0.0000000000006  Pseudomonas mendocina ymp  Bacteria  normal  0.56786  normal  1 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  28.84 
 
 		 224 aa  75.1  0.0000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  28.99 
 
 		 214 aa  75.1  0.0000000000008  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0508  response regulator receiver protein  27.96 
 
 		 212 aa  74.7  0.0000000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  33.33 
 
 		 225 aa  74.3  0.000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_010682  Rpic_1028  two component transcriptional regulator, LuxR family  28.3 
 
 		 222 aa  74.3  0.000000000001  Ralstonia pickettii 12J  Bacteria  normal  0.146412  normal  0.260968 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  28.5 
 
 		 211 aa  73.2  0.000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  29.35 
 
 		 203 aa  73.6  0.000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal  1 
 
 
-
 
NC_007413  Ava_3072  two component LuxR family transcriptional regulator  28.71 
 
 		 209 aa  73.6  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.875677  normal  1 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  31.11 
 
 		 209 aa  73.6  0.000000000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  30 
 
 		 211 aa  73.2  0.000000000003  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  26.85 
 
 		 227 aa  73.2  0.000000000003  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  27.59 
 
 		 216 aa  72.8  0.000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  37.98 
 
 		 209 aa  72.8  0.000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  28.32 
 
 		 257 aa  72.4  0.000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_007908  Rfer_4208  ATP-dependent transcription regulator LuxR  55.17 
 
 		 894 aa  72.8  0.000000000004  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  27.06 
 
 		 226 aa  72  0.000000000006  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  26.54 
 
 		 223 aa  71.6  0.000000000007  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  24.76 
 
 		 214 aa  70.5  0.00000000001  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.749326 
 
 
-
 
NC_014212  Mesil_0065  two component transcriptional regulator, LuxR family  25.25 
 
 		 204 aa  70.9  0.00000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_02200  two component transcriptional regulator, LuxR family  32.03 
 
 		 208 aa  70.1  0.00000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_2145  two component transcriptional regulator, LuxR family  30.35 
 
 		 220 aa  70.5  0.00000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0196231  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  25.62 
 
 		 221 aa  70.1  0.00000000002  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_009952  Dshi_2674  two component transcriptional regulator  29.52 
 
 		 228 aa  70.5  0.00000000002  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00219271  normal  1 
 
 
-
 
NC_012669  Bcav_3804  two component transcriptional regulator, LuxR family  24.4 
 
 		 216 aa  70.5  0.00000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.185264  normal  1 
 
 
-
 
NC_010511  M446_3347  two component LuxR family transcriptional regulator  29 
 
 		 234 aa  70.1  0.00000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.563314  normal  1 
 
 
-
 
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