More than 300 homologs were found in PanDaTox collection
for query gene M446_3347 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010511  M446_3347  two component LuxR family transcriptional regulator  100 
 
 		 234 aa  477  1e-134  Methylobacterium sp. 4-46  Bacteria  normal  0.563314  normal  1 
 
 
-
 
NC_010511  M446_4981  two component LuxR family transcriptional regulator  56.81 
 
 		 244 aa  228  6e-59  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0596  two component LuxR family transcriptional regulator  35.58 
 
 		 228 aa  115  6e-25  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  34.33 
 
 		 230 aa  110  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  32.56 
 
 		 223 aa  107  1e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  33.49 
 
 		 224 aa  105  8e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  29.67 
 
 		 219 aa  102  7e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_010172  Mext_3579  regulatory protein LuxR  29.35 
 
 		 213 aa  97.8  1e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.0227422  normal  1 
 
 
-
 
NC_010511  M446_2139  two component LuxR family transcriptional regulator  37.06 
 
 		 244 aa  98.2  1e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.0202732  normal  0.168937 
 
 
-
 
NC_011894  Mnod_1110  two component transcriptional regulator, LuxR family  36.63 
 
 		 245 aa  95.1  7e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.686827  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  30.69 
 
 		 210 aa  95.1  8e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_4345  regulatory protein LuxR  31.25 
 
 		 216 aa  94  2e-18  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_4801  two component LuxR family transcriptional regulator  40.14 
 
 		 223 aa  93.6  2e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.136897 
 
 
-
 
NC_011757  Mchl_4714  two component transcriptional regulator, LuxR family  30 
 
 		 216 aa  92.4  6e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.375128 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  31.3 
 
 		 227 aa  91.7  1e-17  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  29.56 
 
 		 252 aa  90.9  1e-17  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  31.55 
 
 		 217 aa  91.3  1e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  31.67 
 
 		 248 aa  91.7  1e-17  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4862  two component transcriptional regulator, LuxR family  31.34 
 
 		 215 aa  90.1  2e-17  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.146847 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  30.69 
 
 		 224 aa  88.6  7e-17  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_011662  Tmz1t_2630  two component transcriptional regulator, LuxR family  31.28 
 
 		 243 aa  88.2  1e-16  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  31.19 
 
 		 211 aa  86.3  4e-16  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  30.56 
 
 		 239 aa  86.3  4e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  33.02 
 
 		 225 aa  85.9  5e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_013947  Snas_6085  two component transcriptional regulator, LuxR family  31.88 
 
 		 217 aa  85.9  5e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  28.29 
 
 		 209 aa  84.3  0.000000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  27.18 
 
 		 218 aa  84.3  0.000000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  31.36 
 
 		 221 aa  84.7  0.000000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_011729  PCC7424_0807  two component transcriptional regulator, LuxR family  27.96 
 
 		 228 aa  84.3  0.000000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.218712 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  32.51 
 
 		 212 aa  84  0.000000000000002  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  27.7 
 
 		 220 aa  83.6  0.000000000000002  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  27.7 
 
 		 220 aa  83.6  0.000000000000002  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  28.79 
 
 		 232 aa  84  0.000000000000002  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  33.88 
 
 		 227 aa  83.2  0.000000000000003  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  27.19 
 
 		 227 aa  83.6  0.000000000000003  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  37.93 
 
 		 216 aa  83.2  0.000000000000003  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  29.86 
 
 		 214 aa  83.2  0.000000000000003  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  28.23 
 
 		 220 aa  82.8  0.000000000000004  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  27.75 
 
 		 220 aa  82.8  0.000000000000004  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008825  Mpe_A1686  two component LuxR family transcriptional regulator  30.7 
 
 		 240 aa  82  0.000000000000007  Methylibium petroleiphilum PM1  Bacteria  normal  0.173725  normal  0.554277 
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  28.3 
 
 		 217 aa  82  0.000000000000007  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_003295  RSc2455  response regulator VSRC transcription regulator protein  32.68 
 
 		 221 aa  81.3  0.00000000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  26.87 
 
 		 219 aa  81.3  0.00000000000001  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  28.57 
 
 		 209 aa  81.6  0.00000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  29.44 
 
 		 209 aa  81.3  0.00000000000001  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_010682  Rpic_2723  two component transcriptional regulator, LuxR family  32.84 
 
 		 221 aa  80.1  0.00000000000002  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  31.03 
 
 		 206 aa  80.5  0.00000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  27.75 
 
 		 220 aa  80.5  0.00000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_012856  Rpic12D_2334  two component transcriptional regulator, LuxR family  32.84 
 
 		 221 aa  80.1  0.00000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.477601  normal  0.267999 
 
 
-
 
NC_007489  RSP_4131  two component LuxR family transcriptional regulator  29.17 
 
 		 220 aa  79.7  0.00000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  29.67 
 
 		 220 aa  79.7  0.00000000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  31.13 
 
 		 210 aa  79.3  0.00000000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  hitchhiker  0.000518478 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  28.78 
 
 		 235 aa  79.7  0.00000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  28.85 
 
 		 219 aa  79.3  0.00000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  28.43 
 
 		 219 aa  79.3  0.00000000000004  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  28.22 
 
 		 220 aa  79  0.00000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  28.71 
 
 		 220 aa  79.3  0.00000000000005  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  28.85 
 
 		 219 aa  79.3  0.00000000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.817999 
 
 
-
 
NC_013757  Gobs_2145  two component transcriptional regulator, LuxR family  27.85 
 
 		 220 aa  79.3  0.00000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0196231  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  31.03 
 
 		 221 aa  79  0.00000000000006  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  26.05 
 
 		 212 aa  79  0.00000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  26.89 
 
 		 219 aa  79  0.00000000000007  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  31.25 
 
 		 201 aa  78.2  0.00000000000009  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  28.06 
 
 		 211 aa  77.8  0.0000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  37.31 
 
 		 209 aa  77.8  0.0000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  30.1 
 
 		 212 aa  77.8  0.0000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  30.2 
 
 		 228 aa  78.2  0.0000000000001  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  31.37 
 
 		 214 aa  78.2  0.0000000000001  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  28.22 
 
 		 220 aa  77.8  0.0000000000001  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  29.11 
 
 		 215 aa  77  0.0000000000002  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  28.91 
 
 		 241 aa  77.4  0.0000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.858367 
 
 
-
 
NC_008835  BMA10229_2085  DNA-binding response regulator  29.29 
 
 		 264 aa  77  0.0000000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.844485  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  29.11 
 
 		 215 aa  77  0.0000000000002  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_3763  two component LuxR family transcriptional regulator  29.06 
 
 		 221 aa  77  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.0403461 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  30.95 
 
 		 221 aa  77  0.0000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  27.32 
 
 		 211 aa  77  0.0000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  26.92 
 
 		 228 aa  77  0.0000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  28.22 
 
 		 220 aa  77.4  0.0000000000002  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  28.08 
 
 		 209 aa  77.4  0.0000000000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_1820  two component transcriptional regulator, LuxR family  30.57 
 
 		 216 aa  76.6  0.0000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.677493  normal  0.0923177 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  28.64 
 
 		 215 aa  76.6  0.0000000000003  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA1518.1  DNA-binding response regulator  29.29 
 
 		 223 aa  76.3  0.0000000000003  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.000399536  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0560  DNA-binding response regulator  29.29 
 
 		 223 aa  76.3  0.0000000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0224831  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2062  LuxR family DNA-binding response regulator  29.29 
 
 		 214 aa  76.6  0.0000000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0947149  n/a   
 
 
-
 
NC_009079  BMA10247_A0766  DNA-binding response regulator  29.29 
 
 		 214 aa  76.6  0.0000000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  0.261512  n/a   
 
 
-
 
NC_009075  BURPS668_A2151  DNA-binding response regulator  29.29 
 
 		 214 aa  76.6  0.0000000000003  Burkholderia pseudomallei 668  Bacteria  normal  0.639034  n/a   
 
 
-
 
NC_010682  Rpic_2046  two component transcriptional regulator, LuxR family  35.66 
 
 		 219 aa  76.3  0.0000000000004  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  27.06 
 
 		 236 aa  76.3  0.0000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  29.06 
 
 		 215 aa  76.3  0.0000000000004  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.132796 
 
 
-
 
NC_013525  Tter_1132  two component transcriptional regulator, LuxR family  26.67 
 
 		 214 aa  75.9  0.0000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  26.77 
 
 		 213 aa  75.9  0.0000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  28.64 
 
 		 213 aa  75.5  0.0000000000006  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.226192 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  27.23 
 
 		 238 aa  75.5  0.0000000000006  Frankia sp. CcI3  Bacteria  normal  1  normal  0.135118 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  28.08 
 
 		 212 aa  75.9  0.0000000000006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_5911  two component LuxR family transcriptional regulator  28.5 
 
 		 219 aa  75.5  0.0000000000006  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_1738  two component transcriptional regulator, LuxR family  36.17 
 
 		 219 aa  75.5  0.0000000000007  Ralstonia pickettii 12D  Bacteria  normal  0.0459515  normal  0.949758 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  28.43 
 
 		 215 aa  75.5  0.0000000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  28.85 
 
 		 208 aa  75.5  0.0000000000007  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  28.77 
 
 		 215 aa  75.5  0.0000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  30.33 
 
 		 213 aa  75.5  0.0000000000007  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
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